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AT5G04730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.465
cytosol 0.457
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ankyrin-repeat containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin-repeat containing protein; BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G04700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:CP002688EnsemblPlants:AT5G04730
EnsemblPlants:AT5G04730.1entrez:830351GeneID:830351GO:GO:0016021
Gramene:AT5G04730.1hmmpanther:PTHR24177hmmpanther:PTHR24177:SF39InParanoid:F4JXP4
InterPro:IPR026961KEGG:ath:AT5G04730OMA:LAFFASCPaxDb:F4JXP4
Pfam:PF13962PRIDE:F4JXP4ProteinModelPortal:F4JXP4Proteomes:UP000006548
RefSeq:NP_196093.2STRING:3702.AT5G04730.1TAIR:AT5G04730TMHMM:TMhelix
UniGene:At.65487UniProt:F4JXP4
Coordinates (TAIR10) chr5:-:1364101..1367303
Molecular Weight (calculated) 69487.80 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.12
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVLGEICEN LSLSQQISDD DLERVKRNFL NLQTETITAL MDAFEITWQK TCSRRQLEIV KKLLLDEMTS RGQMENDAYC QSLALDIAAG NGNLTRVKQL
101: CEPHLNQPLA RNNSVRYGLA IPVVRASNAG HKKVTDYLYY NHYKRTLPLV LENDNDVYWA TCLLLDAIFY GFLDIALDII KHLPSVAVTK HARQRLPIYK
201: FIAVKPDLFR SHCNFGFWRH LIYSCIRVSE NPRPNRDNRL FCMTLPQSLL KWFGIKQTYD LKKRHSQAQK LLKQMCTSLR DIMAKNEIRW KETVYEALLE
301: AAKSGNRDFF IEIIKCNSQL LWILNPTSGR NLFQLAVEFK KEKIFNLIHG LDDRKVTLLR SYDKGNNNIL HIAGRLSTPD QLSKISGAAL KMQRESQWFK
401: EVESLVSERE VVQKNKDNKT PRQIFEHYHE HLRKEGEEWM KYTATACSFV AALIATVTFQ AIFTVPGGID GTSGSPLILN DLHFRAFIFT DTLAFFASCI
501: SVLIFLSILT SRYSFDDFIV SLPRKMILGQ SILFISIASM LVAFITSLSA SMRHKPALVY PLKPLASFPS LLFLMLQYPL LKEMISSTYG KRLFYRDTKN
601: WLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)