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AT5G04600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G47120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111NF9eggNOG:KOG4208EMBL:AF378899EMBL:AL162875
EMBL:AY055787EMBL:AY063822EMBL:AY123013EMBL:CP002688
EnsemblPlants:AT5G04600EnsemblPlants:AT5G04600.1entrez:830337Gene3D:3.30.70.330
GeneID:830337GO:GO:0000166GO:GO:0003676GO:GO:0005730
Gramene:AT5G04600.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF243HOGENOM:HOG000242795
IntAct:Q9LZ65InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT5G04600
KO:K14838OMA:HKKMVEGPfam:PF00076Pfscan:PS50102
PhylomeDB:Q9LZ65PIR:T48456PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_196080.1SMART:SM00360SMR:Q9LZ65STRING:3702.AT5G04600.1
SUPFAM:SSF54928TAIR:AT5G04600UniGene:At.4932UniGene:At.65019
UniProt:Q9LZ65
Coordinates (TAIR10) chr5:+:1323700..1325486
Molecular Weight (calculated) 25263.80 Da
IEP (calculated) 10.54
GRAVY (calculated) -0.68
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)