AT5G04500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.913 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycosyltransferase family protein 47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
a member of the Glycosyltransferase Family 64 (according to CAZy Database) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycosyltransferase family protein 47; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: embryo, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 971 Blast hits to 969 proteins in 180 species: Archae - 4; Bacteria - 178; Metazoa - 489; Fungi - 8; Plants - 111; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1283604..1286155 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86435.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 765 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMEETTDNTG TISSQKNVAA SGHNHHHRYK YISNYGVGRR FLFFASCFGF YAFVAATYAW FVFPPHIGRT DHVSSSSLGC REDNEGSWSI GVFYGDSPFS 101: LKPIETRNVW RNESGAWPVT NPVITCASFT NSGLPSNFLA DPFLYVQGDT LYLFFETKSP ITMQGDIGAA KSIDKGATWE PLGIALDEAW HLSFPFVFNY 201: NGEIYMMPES NEIGQLNLYR AVNFPLSWKL EKVILKKPLV DSTIVHHEGI YWLIGSDHTG FGAKKNGQLE IWYSSSPLGT WKPHKKNPIY NGKRSIGARN 301: GGRAFLYDGS LYRVGQDCGE NYGKRIRVSK IEVLSKEEYR EVEVPFSLEA SRKGKNSWNG VRQHHFDVKQ LSSGEFIGLV DGDRVTSGDL FHRVILGYAS 401: LAAAISVVIL LGFLLGVVNC IVPSTWCMNY YAGKRTDALL NLETAGLFSE KLRRIGSRLN RVPPFLRGFV KPNSSMGKFT LGVIVILGLL LTCVGVRYIY 501: GGSGAVEPYP FKGHLSQFTL ATMTYDARLW NLKMYVKRYS RCPSVKEIVV IWNKGPPPDL SELDSAVPVR IRVQKQNSLN NRFEIDPLIK TRAVLELDDD 601: IMMPCDDIEK GFRVWREHPE RLVGFYPRFV DQTMTYSAEK FARSHKGYNM ILTGAAFMDV RFAFDMYQSD KAKLGRVFVD EQFNCEDILL NFLYANASGS 701: GKAVEYVRPS LVTIDTSKFS GVAISGNTNQ HYRKRSKCLR RFSDLYGSLV DRRWEFGGRK DGWDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)