AT5G03800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 175 (EMB175); FUNCTIONS IN: catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: root, flower, leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49170.1); Has 41516 Blast hits to 13216 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 21; Plants - 41054; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1010894..1013584 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101161.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 896 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTVNHHCLL NFPHIPPSIP PNHRPKLLSS LSLYRKPERL FALSASLSLS PATIHECSSS SSSSSSSFDK EETEDIESVI DGFFYLLRLS AQYHDVEVTK 101: AVHASFLKLR EEKTRLGNAL ISTYLKLGFP REAILVFVSL SSPTVVSYTA LISGFSRLNL EIEALKVFFR MRKAGLVQPN EYTFVAILTA CVRVSRFSLG 201: IQIHGLIVKS GFLNSVFVSN SLMSLYDKDS GSSCDDVLKL FDEIPQRDVA SWNTVVSSLV KEGKSHKAFD LFYEMNRVEG FGVDSFTLST LLSSCTDSSV 301: LLRGRELHGR AIRIGLMQEL SVNNALIGFY SKFWDMKKVE SLYEMMMAQD AVTFTEMITA YMSFGMVDSA VEIFANVTEK NTITYNALMA GFCRNGHGLK 401: ALKLFTDMLQ RGVELTDFSL TSAVDACGLV SEKKVSEQIH GFCIKFGTAF NPCIQTALLD MCTRCERMAD AEEMFDQWPS NLDSSKATTS IIGGYARNGL 501: PDKAVSLFHR TLCEQKLFLD EVSLTLILAV CGTLGFREMG YQIHCYALKA GYFSDISLGN SLISMYAKCC DSDDAIKIFN TMREHDVISW NSLISCYILQ 601: RNGDEALALW SRMNEKEIKP DIITLTLVIS AFRYTESNKL SSCRDLFLSM KTIYDIEPTT EHYTAFVRVL GHWGLLEEAE DTINSMPVQP EVSVLRALLD 701: SCRIHSNTSV AKRVAKLILS TKPETPSEYI LKSNIYSASG FWHRSEMIRE EMRERGYRKH PAKSWIIHEN KIHSFHARDT SHPQEKDIYR GLEILIMECL 801: KVGYEPNTEY VLQEVDEFMK KSFLFHHSAK LAVTYGILSS NTRGKPVRVM KNVMLCGDCH EFFKYISVVV KREIVLRDSS GFHHFVNGKC SCRDLW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)