AT5G03795.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.767 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Exostosin family protein; LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT3G07620.1); Has 1413 Blast hits to 1401 proteins in 109 species: Archae - 0; Bacteria - 9; Metazoa - 310; Fungi - 4; Plants - 989; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1007554..1010373 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58575.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 518 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDEDVDGKC KNMSACSSTT SYSTKLFLFM VPLVVISGFV FVNIGPKDST SLLTSLSTTT SHLPPPFLST APAPAPSPLL PEILPSLPAS SLSTKVESIQ 101: GDYNRTIQLN MINVTATSNN VSSTASLEPK KRRVLSNLEK IEFKLQKARA SIKAASMDDP VDDPDYVPLG PMYWNAKVFH RSYLEMEKQF KIYVYKEGEP 201: PLFHDGPCKS IYSMEGSFIY EIETDTRFRT NNPDKAHVFY LPFSVVKMVR YVYERNSRDF SPIRNTVKDY INLVGDKYPY WNRSIGADHF ILSCHDWGPE 301: ASFSHPHLGH NSIRALCNAN TSERFKPRKD VSIPEINLRT GSLTGLVGGP SPSSRPILAF FAGGVHGPVR PVLLQHWENK DNDIRVHKYL PRGTSYSDMM 401: RNSKFCICPS GYEVASPRIV EALYSGCVPV LINSGYVPPF SDVLNWRSFS VIVSVEDIPN LKTILTSISP RQYLRMYRRV LKVRRHFEVN SPAKRFDVFH 501: MILHSIWVRR LNVKIREV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)