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AT5G03680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.
Computational
Description (TAIR10)
PETAL LOSS (PTL); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10000.1); Has 1269 Blast hits to 922 proteins in 144 species: Archae - 0; Bacteria - 109; Metazoa - 238; Fungi - 32; Plants - 703; Viruses - 29; Other Eukaryotes - 158 (source: NCBI BLink).
Protein Annotations
BioGrid:17033eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AL162506
EMBL:AY555728EMBL:CP002688EnsemblPlants:AT5G03680EnsemblPlants:AT5G03680.1
entrez:831757GeneID:831757Genevisible:Q9LZS0GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009909GO:GO:0010200GO:GO:0042803GO:GO:0046621
GO:GO:0048441GO:GO:0048442GO:GO:0048498GO:GO:0090428
Gramene:AT5G03680.1hmmpanther:PTHR21654hmmpanther:PTHR21654:SF5HOGENOM:HOG000006038
InParanoid:Q9LZS0InterPro:IPR017877KEGG:ath:AT5G03680ncoils:Coil
OMA:ANERAWIPaxDb:Q9LZS0Pfam:PF13837Pfam:Q9LZS0
Pfscan:PS50090PhylomeDB:Q9LZS0PIR:T48395PRIDE:Q9LZS0
PRO:PR:Q9LZS0PROSITE:PS50090ProteinModelPortal:Q9LZS0Proteomes:UP000006548
RefSeq:NP_195988.1SMR:Q9LZS0STRING:3702.AT5G03680.1TAIR:AT5G03680
tair10-symbols:PTLUniGene:At.50425UniProt:Q9LZS0
Coordinates (TAIR10) chr5:+:957858..960760
Molecular Weight (calculated) 66642.50 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.94
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)