AT5G03540.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exocyst subunit exo70 family protein A1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst subunit exo70 family protein A1 (EXO70A1); INVOLVED IN: lateral root morphogenesis, mucilage biosynthetic process involved in seed coat development, root development, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, plasma membrane, membrane, exocyst; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:890194..893916 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59238.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||
| Length | 523 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNKSFKSSD GVLNHANSLL AKAQSKLEEE FKQLLASYSK AVEPDRLFDG LPNSLRPSSD GDGGGKPHGG HHNDDAETAA YTLPILIPSR VLPLLHDLAQ 101: QMVQAGHQQQ LLQIYRDTRS FVLEESLKKL GVEKLSKEDV QRMQWEVLEA KIGNWIHFMR IAVKLLFAGE RQVCDQIFRG FDSLSDQCFA EVTVSSVSML 201: LSFGDAIARS KRSPEKLFVL LDMYEIMREL HTEIETIFKG KACLEIRDSA TGLTKRLAQT AQETFGDFEE AVEKDATKTA VLDGTVHPLT SYVINYVKFL 301: FDYQTTLKQL FLEFGNGDDS NSQLASVTMR IMQALQNNLD GKSKQYKDPA LTHLFLMNNI HYMVRSVRRS EAKDLLGDDW VQRHRRIVQQ HANQYKRVAW 401: TKILQSSSAQ GLTSSGGGSL EGGNSSGVSR GLLKERFKMF NMQFDELHQR QSQWTVPDTE LRESLRLAVA EVLLPAYRSF LKRFGPLVES GKNPQKYIKY 501: TAEDLERLLG ELFEGKSMNE PRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)