AT5G03415.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor DP | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. | ||||||||||||
| Computational Description (TAIR10) |
DPB; CONTAINS InterPro DOMAIN/s: Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G02470.3). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:842842..845200 | ||||||||||||
| Molecular Weight (calculated) | 41993.60 Da | ||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||
| Length | 379 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT 101: GRGLLCEKVE SKGRTTYNEV ADELVAEFAL PNNDGTSPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWRGLPRT SLSDIEELKN ERLSLRNRIE 201: KKTAYSQELE EQYVGLQNLI QRNEHLYSSG NAPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNFV LKTMKFCDQP PQQPNGRNNS 301: QLVCHNFTPE NPNKGPSTGP TPQLDMYETH LQSQQHQQHS QLQIIPMPET NNVTSSADTA PVKSPSLPGI MNSSMKPEN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)