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AT5G03360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : DC1 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DC1 domain-containing protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G26380.1); Has 3288 Blast hits to 689 proteins in 36 species: Archae - 2; Bacteria - 14; Metazoa - 5; Fungi - 0; Plants - 3251; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G03360EnsemblPlants:AT5G03360.1entrez:831864
ExpressionAtlas:F4KFA3GeneID:831864GO:GO:0047134Gramene:AT5G03360.1
InParanoid:F4KFA3InterPro:IPR004146InterPro:IPR011424PaxDb:F4KFA3
Pfam:PF03107Pfam:PF07649PRIDE:F4KFA3ProteinModelPortal:F4KFA3
Proteomes:UP000006548RefSeq:NP_195956.1SUPFAM:SSF57889TAIR:AT5G03360
UniGene:At.33287UniProt:F4KFA3
Coordinates (TAIR10) chr5:+:817954..825149
Molecular Weight (calculated) 185391.00 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.36
Length 1610 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSEQQTELL LRISQLVSFV DPLFWISDEA TSYVVLVTSR IIDLLSSMDL DSLPKPETKL MSLTTQTIAL FNTMDLKSQP KPLRKFISLV SENIPLVNSI
0101: DSATDQKLKL LFFKIRELEP EPELISLLHQ IYYLVKSKDP EWEKLISLCP QVQVSFHDGK FQVTGNVQRC SNKKRDCRFE RYKFSGEDYT HFRCSACNGD
0201: DHDEEYDKAP LEIIHPLHPK HSLQLVLIEA SYRTRECYCC DEDLEQMFYY CPACDYAINI ACVEKPRRLS VDHPKWHEHT LSLFPRKTPL TCSVCALTHT
0301: RCPFYICPPC DFVAHQSCFS LPRVIRISRH HHRISFTHSF EKGDWSCGVC RKKIDNDYGG YSCIKDGCFY GAHSRCATRR SVWDGKELEG EPEENEEELK
0401: PFVRISDGII QHFSHKHHHL RLDENTDRDY DENMECQACV RPIYFGNFYS CMQCDFILHE ACANLPRRHH HPIHAHLLTL VTEYYNVMVH RSQVCSACPS
0501: LLRACFFYKC DEQDCDFQLH VQCAVVSEPL VHESHMHPLF LTSEPYEARL CSVCKKESWL LLSTKETFNC IEECDFALCF GCATLPQKLR YKHDKHMLTL
0601: SYGNKTSTMA YWCEVCEGYL NPKERFYTCE EDCCVTLHIE CIFAMTMKPY SWWLFSGKKE DHGGTSDASH QQLQDEMSEA KAEDERQRTI CGTLPKLRIL
0701: VRIPTMEAKL RNFLMFQSYF LWFNNSSPNP GPYELGNDGP SPKYCNRSAL QQFTSRQSRG LQRKKTEPKS KIISLIKQII SVSNSVSGPG PECELVSLVT
0801: KMISIISSTY FDLKQSEPEL ISLTAQIFSI LLAMDQRSEL LTLLSQLGRL VQTEELKITN NQQVPLTEET DVFDGYTEVT NWESELILYI ISQMVSLIRG
0901: EDMCLELATD LTGYVTQLIP LIKSLNLDSN PESEQEPKIT SLIRQIISLR NTYVSGPESQ LVSLVTRIIS IISSTDLDPT ESQWRLTSVT YKTCRILNEM
1001: KDSNSEMASL INQIHDLVDA DERRKPESRL ISRITQLMSL TNSWSYTSDR DSKIISLIIR IIDLVKSMDL DSKTKPKSKL MSLITQTISV YNSMDLDSQP
1101: KPLRKLISLV SHCLHNVRPT DSDSDSDGNY VSHVEDSLNH EPELELISLI HQIGSLVISM NPKWKKLISF CPIFEVSLNH GKFQVSQELT CRSNRLYYIP
1201: MKWDCLQVNW NLLKLPGEND FTHFRCRGCN GENHKGYEQA PVDVKHPLHP KHSLQLVSSQ PSSVRTRECY CCDEDLAHIF YCCLACNYAM NVACVKKPSV
1301: LYRDYTRWHE HKLALFPRLQ ASSLTCNLCA LADSSSPIYM CPPCDFVVHQ RKIDNDYGGY SCIKDGCSYA AHSRCATQRN VWDGIELEGK PEEVEEEVVE
1401: PFVTISHGII QHFSHPQHHL KLDENTSKDY DEDKLCQACI MPIYFGNFYS CVQCDYILHD ECASFPRKMH HPIHPHLLTL VNSDGVINVR KKCSACPWMC
1501: TTGFFYECSK EDFQLHVQCA NVSEPLVHES HMHPLFLTTK PEEWRVCSAC KESDCTVTNE TFNSIECDFA LCFRCATLPQ KLRYKHDKHT LTLSYGEETR
1601: GNIGTRRVNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)