AT5G03360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DC1 domain-containing protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DC1 domain-containing protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G26380.1); Has 3288 Blast hits to 689 proteins in 36 species: Archae - 2; Bacteria - 14; Metazoa - 5; Fungi - 0; Plants - 3251; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:817954..825149 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 185391.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||
| Length | 1610 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSEQQTELL LRISQLVSFV DPLFWISDEA TSYVVLVTSR IIDLLSSMDL DSLPKPETKL MSLTTQTIAL FNTMDLKSQP KPLRKFISLV SENIPLVNSI 0101: DSATDQKLKL LFFKIRELEP EPELISLLHQ IYYLVKSKDP EWEKLISLCP QVQVSFHDGK FQVTGNVQRC SNKKRDCRFE RYKFSGEDYT HFRCSACNGD 0201: DHDEEYDKAP LEIIHPLHPK HSLQLVLIEA SYRTRECYCC DEDLEQMFYY CPACDYAINI ACVEKPRRLS VDHPKWHEHT LSLFPRKTPL TCSVCALTHT 0301: RCPFYICPPC DFVAHQSCFS LPRVIRISRH HHRISFTHSF EKGDWSCGVC RKKIDNDYGG YSCIKDGCFY GAHSRCATRR SVWDGKELEG EPEENEEELK 0401: PFVRISDGII QHFSHKHHHL RLDENTDRDY DENMECQACV RPIYFGNFYS CMQCDFILHE ACANLPRRHH HPIHAHLLTL VTEYYNVMVH RSQVCSACPS 0501: LLRACFFYKC DEQDCDFQLH VQCAVVSEPL VHESHMHPLF LTSEPYEARL CSVCKKESWL LLSTKETFNC IEECDFALCF GCATLPQKLR YKHDKHMLTL 0601: SYGNKTSTMA YWCEVCEGYL NPKERFYTCE EDCCVTLHIE CIFAMTMKPY SWWLFSGKKE DHGGTSDASH QQLQDEMSEA KAEDERQRTI CGTLPKLRIL 0701: VRIPTMEAKL RNFLMFQSYF LWFNNSSPNP GPYELGNDGP SPKYCNRSAL QQFTSRQSRG LQRKKTEPKS KIISLIKQII SVSNSVSGPG PECELVSLVT 0801: KMISIISSTY FDLKQSEPEL ISLTAQIFSI LLAMDQRSEL LTLLSQLGRL VQTEELKITN NQQVPLTEET DVFDGYTEVT NWESELILYI ISQMVSLIRG 0901: EDMCLELATD LTGYVTQLIP LIKSLNLDSN PESEQEPKIT SLIRQIISLR NTYVSGPESQ LVSLVTRIIS IISSTDLDPT ESQWRLTSVT YKTCRILNEM 1001: KDSNSEMASL INQIHDLVDA DERRKPESRL ISRITQLMSL TNSWSYTSDR DSKIISLIIR IIDLVKSMDL DSKTKPKSKL MSLITQTISV YNSMDLDSQP 1101: KPLRKLISLV SHCLHNVRPT DSDSDSDGNY VSHVEDSLNH EPELELISLI HQIGSLVISM NPKWKKLISF CPIFEVSLNH GKFQVSQELT CRSNRLYYIP 1201: MKWDCLQVNW NLLKLPGEND FTHFRCRGCN GENHKGYEQA PVDVKHPLHP KHSLQLVSSQ PSSVRTRECY CCDEDLAHIF YCCLACNYAM NVACVKKPSV 1301: LYRDYTRWHE HKLALFPRLQ ASSLTCNLCA LADSSSPIYM CPPCDFVVHQ RKIDNDYGGY SCIKDGCSYA AHSRCATQRN VWDGIELEGK PEEVEEEVVE 1401: PFVTISHGII QHFSHPQHHL KLDENTSKDY DEDKLCQACI MPIYFGNFYS CVQCDYILHD ECASFPRKMH HPIHPHLLTL VNSDGVINVR KKCSACPWMC 1501: TTGFFYECSK EDFQLHVQCA NVSEPLVHES HMHPLFLTTK PEEWRVCSAC KESDCTVTNE TFNSIECDFA LCFRCATLPQ KLRYKHDKHT LTLSYGEETR 1601: GNIGTRRVNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)