AT5G03270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.954 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lysine decarboxylase family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lysine biosynthetic process via diaminopimelate; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 4676 Blast hits to 4675 proteins in 1444 species: Archae - 14; Bacteria - 3212; Metazoa - 10; Fungi - 132; Plants - 382; Viruses - 0; Other Eukaryotes - 926 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:781870..783997 | ||||||||
| Molecular Weight (calculated) | 24996.10 Da | ||||||||
| IEP (calculated) | 6.51 | ||||||||
| GRAVY (calculated) | -0.14 | ||||||||
| Length | 229 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MENEEGKREM TKKQSSRFKS ICVFCGSSNG NKASYQDAAI DLAKELVMRK IDLVYGGGSI GLMGLVSQAV HDGGRHNNNN NGNDDALFCH SVNVSQTNSK 101: LTGETVGEVK EVADMHQRKA VMAKHSDAFI TLPGGYGTLE ELLEVITWAQ LGIHDKPVGL LNVDGYYDAL LLFIDKAVEE GFILPTARHI IVSAPTAREL 201: FIKLELNMVS LDRISKHALS LFQVMSKAG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)