AT5G03010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G03020.1); Has 525 Blast hits to 513 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 36; Fungi - 0; Plants - 477; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:704684..705382 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 26822.00 Da | ||||||||||||||||||||||||
IEP (calculated) | 9.02 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||
Length | 232 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTPKSRGFVR RRRSRRVLVL DCRSQQWRSL PKMRQPRASP AAYVKDGLII VIGGCRSKNI ETWGEIYDLK TNTWGRILLQ SHDPTVQNAY LNRFKPNLQT 101: NACYVEIDKV SCLIFLSDGK LFWRETKQGF ERCSVILGDD EQVSSYQLVS VANAAGGGRV TVWWKSGLKV LDLLSGTETW ECYTNIRCAE ISFERRGLRE 201: LWGFVEWSRE VFTVDGYDDT YDFFLNSAIV TY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)