AT5G02930.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.715 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G02910.1); Has 2185 Blast hits to 2152 proteins in 42 species: Archae - 0; Bacteria - 2; Metazoa - 16; Fungi - 0; Plants - 2164; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:682577..684480 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53952.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.29 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 469 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFKQPSRRD RPVMFKRSKN VSVDVGVDSI SDLPDAVLQH IFSYIPTELA IRTSVLSKRW RHVWSETPHL SFEWLKVSPK LINKTLASYT ASKIKSFHLC 101: TRYSYEADTH HVNSSIEFAM SHNVDDLSLA FRRCSPFYNF DDCFYTNSSL KRVELRYVDL MPRCMVSWTS LKNLSLTDCT MSDESFLEIL SGCPILESLS 201: LKFCMSLKYL NLSKSLRLTR LEIERISYIR APMLSMQIVA PYIHYLRLRD SEAHCTFVDV SSLTEANVDV STFHPRTCYH DFDPLDPHDL LVMVQTMLKT 301: FQKVEKLTLG VNLLQMLSLS KIPSLPLPML KVKTLTLETM IIRSVVPGIA RLLQNLPGLK KITVYTTNPC NTEVEPCVNS YLDAQDLNPD QWWRLDDVVF 401: PISSEYEVLK PEIMASFMEL LLANTRTLET LVVELGSCVA RSRFKELFQI ALTLSHDKKV SIMLKRSNG |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)