AT5G02900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 96, subfamily A, polypeptide 13 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP96A | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 96, subfamily A, polypeptide 13 (CYP96A13); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 12 (TAIR:AT4G39510.1); Has 27924 Blast hits to 27854 proteins in 1456 species: Archae - 45; Bacteria - 2340; Metazoa - 10567; Fungi - 6003; Plants - 7899; Viruses - 3; Other Eukaryotes - 1067 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:674060..675569 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54763.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASISLFEAS IAIFCFIILH FFLGNWPVLG MLPGLLLEFH RIYDFSVEVL ENSDLTFPFK GPWFTGMDML FTVDPTNIHH IMSSNFSNYT KGPDFKQVFD 101: VFGDGILTTD DSELWKNLKK ASLVMLNHQG FQKNGTVVDL QDVFKRFMFD TTLVTVTGSA DPRSLSIEMP EVEFAKALDH VGEGIMHRHV RPRLLWKLQK 201: CVGFGQEKKF SKADATLNQA CAKYILEKRE ETRSQGFDYH SNGSESEDIL TYHIKIDTTK YELLNPSDDK FLRDTILAFV LAGRDTTASA LTWFFWLLLE 301: NPQVVTKIRQ EINTSNGGQE KPSCEPMEYL NNLVYLHGAL YEAMRLYPPV PFERMSPIKP DVLPSGHKVD SSMKILIFIY ALGRMRAVWG EDASEFKPER 401: WLSETTSLRH EPSFKFLAFN AGPRSCIGKQ LAMTLMKIVV VEILQNYDIK VVKGQKKIEP APGPILRMKH GLRVTLTKKC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)