AT5G02390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3741) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07620.1); Has 4713 Blast hits to 3576 proteins in 331 species: Archae - 20; Bacteria - 252; Metazoa - 1533; Fungi - 380; Plants - 348; Viruses - 15; Other Eukaryotes - 2165 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:508764..511710 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95233.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||
| Length | 835 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKNLRHKVT CSPIQNHPGF MWGLFDILKH NHWRYIKKRL PHKRPVCRRT APGTKNEVNN TIPSSPDGIP VPKIKLEDKT DVESVQRPKK PSSAVKSKES 101: SNSGEKTKKK HNPEEKSKKL NSEERSRKTH SEIKRSVKAL IKALVIEDKS KKKGRHHRSC TYPVQSNSKE KDSLSEVGSS DKNSSNGDER NRVFNKKVGI 201: SPAVGSLNPL YLMSEESSNS DSEEFRVDNN IQVDDNTDGS KSDFDEKEFK KKEKSDDEEA WFDPKMRHTK GFSENDDDTS PRRSKACLDA LNLIHMNRNF 301: LLKVLQDPGS PLARHFQSQQ SFSSKTMTKA GSFPTHGINR EDHNKAFDPV GDVDKIPMSP PSIAAEHRAD GIQKMNETVL KLGDEDSSGS GYARKRGKNQ 401: VVIKRFKDLR QKIKHVINEN KNEKHRITMD AVLDKVPRKY GFSKDLRDDI FEHLKGNSAA KNNNKAEGTK LKQITRASSL CGSLDRYLQL YECSFQREAK 501: NSSNSEKSKM ELEESALPSK RAPKFLGRIL SLPQMKFHAL KIDDLTVQSI EEEQDGLDNI SEISEDHSQS SEHETLDQTM DASEDSPVDA ETEQDREIST 601: LDVEHETRSL KESSEESPNN VSTVDIDENA SVFDISRDLD TETVSTSKQL DEEVLNIDAQ DKVKFNYVRD ILEISGFNAP ESLSMWQLDY QPLDPLVYEE 701: VTTTTTGCMF QDPECSRNEE EGGNCNHLLL FDLINEVLIE IYERSYHYYP KPLSSLCKIH PMPVGYSVLK EVWVRISCYL RYKPYDEQQS FDKVMSRDLS 801: RDDGWMDLQF ESECVGIEVE DLIFEELLEE LLISC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)