AT5G02360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.977 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DC1 domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DC1 domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G53340.1); Has 627 Blast hits to 480 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:500626..502329 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38917.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSNSVGEFR EGEIDGKPFL IYTLLSQTES PSSGEAAVDS DGGDGRLSLE PRILCPTLRL KVKKLKPYTR DSNRSFFPMV VSPHFPTIQS GHEQPEYMLH 101: SDSFHQDCIY FPYVIKISRH HHRISYTSSL PSGKWSCGVC RQMVDNDYGA YSCNKCDDYF VHSRCALRSD LWDGIELEGV PEEPEIVVEP FITISDGIIL 201: HFSHGHHLKL KISRVYDEKK VCQACILPIY EGSYYSCMDE CDFILHEACA NAPCKKHHAL RPHPLTLTVI TSEYEGNVGR FCCNACQRES CGFVYEDLGA 301: KIGVLPYHTR QGINMTSISS NFMRRKRQMI IQSGVMHAKE EY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)