AT5G02140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pathogenesis-related thaumatin superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G18250.2); Has 1588 Blast hits to 1558 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 96; Plants - 1388; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:423384..424437 | ||||||||||||
| Molecular Weight (calculated) | 31175.50 Da | ||||||||||||
| IEP (calculated) | 8.09 | ||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||
| Length | 294 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKSATLFLL FLTISAFTDG AQLIIVNNCQ ESIWPGILGG GGQITPRNGG FHMGSGEETI IDVPDKWSGR IWGRQGCTFN QNGKGSCQTG DCNDGSINCQ 101: GTGGVPPATV VEMTLGSSSS PLHFYDVSLV DGFNLPVSMK PIGGGVGCGV AACEVNLNIC CPSALEVKRD GKVVGCKSAC LAMQSAKYCC TGEYANPQAC 201: KPTLFANLFK AICPKAYSYA FDDSSSLNKC RASRYVITFC PPKSLNEKLR KFELKIESKF GHYTVVTILL TSVLKTQALA GGSKDIKDGF SAYS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)