AT5G01690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.643 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 27 | ||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 27 (CHX27); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 26 (TAIR:AT5G01680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:257410..260345 | ||||||||
| Molecular Weight (calculated) | 84464.10 Da | ||||||||
| IEP (calculated) | 8.35 | ||||||||
| GRAVY (calculated) | 0.23 | ||||||||
| Length | 745 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MENITKTFQY GGVDWLCEPW VGAGSLGIGR GENPLKFALP LLLLQISVFS IFSVSFQFLL RPFGKFAFLT QMLAGICLGP SVIGRNKQYM ATFFYARSVY 101: IIESFEAICF LFICYITTCQ VDTRMIKRVG KLAFINGILL FLIPFVWGQF AAILISKRLK SGPAGIPPVE FHHVAIVQST MFFQVVYGVL SSLKMLNTEP 201: GRLALASMMV HDCLSWCFFM LNIAIKLNVD LPNKNRAAFL SVLQTEMNAD DNDIGDSICV PTTNAVDEES NTRRTLSQGL LSLCYMRLAL HLLPLGRICG 301: FTLLLWCGRL RSSHPKTSAS RHGTVRQNRD VIRFELLFGV VRFAKMIAIA LPSLYYKVPL WHAILVGFIV NIQGLYDVQI YKQNFNYTKI SSKSFGAMVM 401: SATVNSTIFI VIVKKLYQTM SKRNPYKRRT VQHCRVEAPL RILTCFRNRE AVRPVLDLVE LSRPAIGSPL SVFAVNLEEL NNHSLPLLIH HTQEISPFLV 501: PSRRDQIVKA FHNFEKTNQE TVLIECFTAV APRKTMHEDV CAIAFDQETD IVILTLDAGI ELWERLLCRN LLHNCPCSVA LFIDRGRLPD FRFVPLKKLT 601: INIGAIFLGG PDDREMLAYA TRLASHPSVE LQVFRLVDQN GVSPLRDMVE RNHDMRVINV FRKENSEKNI IFREVRIEEA VNLLDLLRKE GDDFDLMMVG 701: IRHEENLLML EGLSEWSDMK ELGEVGDVLI SKDLELSVSV LAVQQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)