AT5G01660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:244504..248442 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72562.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.13 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQRRGKFSF RNLTKSQLGG VVFGCTKNTI KECMSKQLFG LPSNHYPYVQ KIDIGLPLFL FNYSDRTLHG IFEAAGCGQL NFDPYGWTSD GSERTSYPAQ 101: VPISVRLQCE PLSEEKFKPA IADNYYSSHH FWFELDHFQT RKLTCLLTSF AVKPKPPMNT PNTRQIFRLI SSSEKKENSD EVKPSENEPV GSLEVSLSSG 201: GESDSSAAAS HPGFSENHPD VQNPKQIDKD HVLEKLKDLV FSHDEHGDNS LTETVEQANI PTCKNLEDRD TLEEETCSEG KIDGSCLVSS PLPHTISQLM 301: HEVKELRACG LENSTKICYL EEKLDKAHKE IYQLTERCNM LESISGPLIT KAGGSDLEIH SPDDTSLDPT EAILLLGGFD KDSETWLSSV QSYFPSRNVV 401: KAHSSMSCIR SNASVAKLDG KIYVFGGDDG GRGWTNSAES FNQTDGQWSL CPPLNERKGS LGGATLDGKI FAIGGGNGMV SFSDVEMLDP DIGRWIRTRS 501: MGQERFAVAS VEHKSSIYAV GGYDGKEYLN TAERFDPREH SWMNIASMKS RRGCHSLVVL NEKLYAIGGF DGETMVSSVE IYEPRTGTWM TGEPMKDLRG 601: YSAVAVVKDS IYVIGGYKGE EDDILDTVEC FKEGEGWKNV PSSSIGRRCF LSAVAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)