AT5G01620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.491 plasma membrane 0.288 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRICHOME BIREFRINGENCE-LIKE 35 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRICHOME BIREFRINGENCE-LIKE 35 (TBL35); LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 34 (TAIR:AT2G38320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:232882..234821 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52691.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQRWSRKKS RLPLAGLLFI LVVTFMILFN ERSIQQIHHH AASHTQNLRE PSTFDFVKPN VPRINYLGAH EVLDRFSKCN STKEYSGKKI GWVDPFEDHP 101: GQVTKEEQKC DVFSGKWVFD NSSSYPLHKE SQCPYMSDQL ACQKHGRKDL EYQHWRWQPH ACNLKRWNAI EMWEKLRGKR LMFVGDSLNR GQWISMVCLL 201: QSVIPRDKQS MSPNAHLTIF RAEDYNATVE FLWAPLLVES NSDDPVNHRL SERIIRPDSV LKHASKWQHA DILIFNTYLW WRQDSVKLRW SSEEKGSCEE 301: VKSAEGMEMA MDSWGDWVAN NVDPNKKRVF FVTMSPTHQW SREWNPGSEG NCYGEKKPIE EESYWGSGSD IPTMRMVKRV LERLGPKVSV INITQLSEYR 401: KDGHPSVYRK FWEPLNEDRL KNPASYSDCT HWCVPGVPDV WNQLLFHFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)