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AT5G01380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17171eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AF206715
EMBL:AL161746EMBL:AY271677EMBL:BT028926EMBL:CP002688
EnsemblPlants:AT5G01380EnsemblPlants:AT5G01380.1entrez:831895GeneID:831895
Genevisible:Q9SDW0GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0042802GO:GO:0043565Gramene:AT5G01380.1
hmmpanther:PTHR10032hmmpanther:PTHR10032:SF215HOGENOM:HOG000241002InParanoid:Q9SDW0
IntAct:Q9SDW0InterPro:IPR001005InterPro:IPR017877InterPro:IPR027759
InterPro:IPR027775KEGG:ath:AT5G01380ncoils:CoilOMA:WEVISTR
PANTHER:PTHR10032PANTHER:PTHR10032:SF215PaxDb:Q9SDW0Pfam:PF13837
Pfam:Q9SDW0Pfscan:PS50090PhylomeDB:Q9SDW0PIR:T48160
PRIDE:Q9SDW0PRO:PR:Q9SDW0PROSITE:PS50090ProteinModelPortal:Q9SDW0
Proteomes:UP000006548RefSeq:NP_195758.1SMART:SM00717SMR:Q9SDW0
STRING:3702.AT5G01380.1TAIR:AT5G01380UniGene:At.33561UniProt:Q9SDW0
Coordinates (TAIR10) chr5:-:155784..157451
Molecular Weight (calculated) 38274.80 Da
IEP (calculated) 6.52
GRAVY (calculated) -1.27
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)