AT4G39840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18485268..18486623 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50612.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.29 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||
| Length | 451 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPLKYLCFR KVLLLLLYSS LFLFSSSSFF ASSVDDHELQ RIDPHFRVRR LLVKDLDSTG DDDETNLPPP PKKKKLLTDS VSSSSSSSGT KKNQTKLLKP 101: ISSSSSTKNQ TKLAKTTTMG TSHKLNSTKS SSNTTKTSSE LKKLNSGTKS TNSTSSIKKS ADLSKSSSSK NKTTIKPPSS KLSSPPSEKK SQPSSKPVTK 201: SKQSEKEIKP FWLDDEEDED FVSEFRDLPT RFQRSLIPDL ERISTTSKNY INKANKQITK NFKPYFGNKY APTIASVVSF VFILVPLLLV SLIFNRFKAY 301: FSLQKILIFI QIYLSIYFSI LCLSSLVTGI EPLKFLYATS SSTYVCLQIL QTLGYVFYLL LLLMYLVLVF STDCGLGLKV LGLAQTFVGF AVGLHYYVAV 401: FHRVVLRQPP KTNWKIHGVY ATCFLLICLL SNAERRKKEY LEEGGDEGKK N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)