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AT4G39650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : gamma-glutamyl transpeptidase 2
Curator
Summary (TAIR10)
The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.
Computational
Description (TAIR10)
gamma-glutamyl transpeptidase 2 (GGT2); CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: gamma-glutamyl transpeptidase 1 (TAIR:AT4G39640.2); Has 9214 Blast hits to 9192 proteins in 1483 species: Archae - 86; Bacteria - 4248; Metazoa - 714; Fungi - 303; Plants - 110; Viruses - 1; Other Eukaryotes - 3752 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G39650-MONOMERBRENDA:2.3.2.2EC:2.3.2.2EC:3.4.19.13
eggNOG:COG0405eggNOG:KOG2410EMBL:AK175882EMBL:AK220806
EMBL:AL022605EMBL:AL161595EMBL:BT012661EMBL:CP002687
EnsemblPlants:AT4G39650EnsemblPlants:AT4G39650.1entrez:830119GeneID:830119
Genevisible:Q680I5GO:GO:0003840GO:GO:0005886GO:GO:0006751
GO:GO:0016756GO:GO:0034775GO:GO:0036374GO:GO:0048046
Gramene:AT4G39650.1gramene_pathway:2.3.2.2gramene_pathway:PWY-4041gramene_pathway:PWYQT-4432
hmmpanther:PTHR11686hmmpanther:PTHR11686:SF29HOGENOM:HOG000175620InParanoid:Q680I5
InterPro:IPR000101InterPro:IPR029055KEGG:00430+2.3.2.2KEGG:00460+2.3.2.2
KEGG:00480+2.3.2.2+3.4.19.13KEGG:ath:AT4G39650KO:K18592MEROPS:T03.A03
OMA:GMYIIAGPANTHER:PTHR11686PaxDb:Q680I5Pfam:PF01019
Pfam:Q680I5PhylomeDB:Q680I5PIR:T05002PRIDE:Q680I5
PRINTS:PR01210PRO:PR:Q680I5ProteinModelPortal:Q680I5Proteomes:UP000006548
Reactome:R-ATH-174403Reactome:R-ATH-2142691Reactome:R-ATH-5423646RefSeq:NP_195675.2
SMR:Q680I5STRING:3702.AT4G39650.1SUPFAM:SSF56235TAIR:AT4G39650
tair10-symbols:GGT2TIGRfam:TIGR00066TIGRFAMs:TIGR00066UniGene:At.50699
UniPathway:UPA00204UniProt:Q680I5
Coordinates (TAIR10) chr4:+:18403602..18405914
Molecular Weight (calculated) 61603.30 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.06
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSFMSLVRT ATIALLLIAF LQNANAVKNL QSIVAYHGAV ATDDGRCSAI GTNVLRQGGN AIDASVAAAL CLGVVSPASS GIGGGAFTMI KLANGTEVAY
101: DSRETAPLSA TEDMYGDNPE RKKKGSLSVG VPGEVAGLYT AWTQHGKLPW KQLVEPAEKL AAEGFKISKY LYMQMNATRS DILADKGLSE LFVSNGELKK
201: PGAICRNPKL ADTLSQIAEY GPKAFYNGTV GFNLVSDIQK AGGIITLKDL QNYNVKVKEP LSTEILGYRL LGMPPPSSGG PAMMLILNIL AQYGIPSGVS
301: GPLGVHRLVE ALKHAFAVRM NLGDPDFVPE VTNVVADMLS PKFAQDLKSK INDEKTFDPK YYGGKWGQIK DHGTSHLSII DSERNAVSMT STINGYFGAI
401: MLSPSTGIVL NNEMDDFSIP TKSGGDPDVP PPAPANFIRP GKRPLSSMTP TIVLKDGKVK AALGASGGMY IIAGTTQVYL NHFFLNMDPL SSVVAPRIYH
501: QLIPNKASYE NWTTVYSDHF EIPEEIRLVL EKKGQVLTPI AGGTISQLIV EQSDGKSGGI SKLVAVSDPR KGGFPSGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)