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AT4G39590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G61540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL078620EMBL:AL161595
EMBL:AY084368EMBL:CP002687EMBL:DQ446908EnsemblPlants:AT4G39590
EnsemblPlants:AT4G39590.1entrez:830113Gene3D:2.130.10.80GeneID:830113
Genevisible:Q1PE10Gramene:AT4G39590.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23
InParanoid:Q1PE10InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916
KEGG:ath:AT4G39590OMA:NNTHWFTPaxDb:Q1PE10Pfam:PF00646
Pfam:PF01344Pfam:Q1PE10Pfscan:PS50181PhylomeDB:Q1PE10
PIR:T09375PRIDE:Q1PE10PRO:PR:Q1PE10PROSITE:PS50181
ProteinModelPortal:Q1PE10Proteomes:UP000006548RefSeq:NP_568062.1SMART:SM00256
SMART:SM00612STRING:3702.AT4G39590.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT4G39590UniGene:At.31083UniProt:Q1PE10
Coordinates (TAIR10) chr4:-:18387515..18388723
Molecular Weight (calculated) 45746.00 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.46
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MFPMSSTSRS SAANNRKDPP RKKNKETPSP VTREPTSIDS LPNDLLLNCF ARVSRMYYPA LSRVSKRFRS IVTSPEIYNT RSLLNRTEKC LYLCLRFPFD
101: NNTHWFTLYQ NPNRTVSDKV FLQIPSPQYP LTLSSNLVAV GSNIYRIGGT VGDDSCPLGF DREPSSKVSI LDCRSHTWRD GPRMRLNRRS STTSVVDGKI
201: YVTGGTEDTD NPSHWIEVFD PKTQSWGTVT NPHIVKVWEE VCYRRAVKSI GHDGKLYLSG DKYVVYDPDE GKWNSVEEHW LIGYAIGSSN CVVDNILFYW
301: DQGVFKWYDS KVSSWKQLKG LEGLPDDFSQ REYCKLVDLG GKMAVLWDKW EYSGVCMIFC AEISLEKRDG DEIWGKVEWF DTVLEVGASC SLKSADALSA
401: SV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)