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AT4G39580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39550.1); Has 8774 Blast hits to 4706 proteins in 290 species: Archae - 12; Bacteria - 553; Metazoa - 6410; Fungi - 9; Plants - 1424; Viruses - 78; Other Eukaryotes - 288 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL078620EMBL:AL161595
EMBL:CP002687EnsemblPlants:AT4G39580EnsemblPlants:AT4G39580.1entrez:830112
Gene3D:2.130.10.80GeneID:830112Gramene:AT4G39580.1hmmpanther:PTHR24414
hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515InParanoid:Q9SVA0InterPro:IPR001810
InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT4G39580OMA:GTERCER
PaxDb:Q9SVA0Pfam:PF00646Pfam:PF01344Pfam:Q9SVA0
PhylomeDB:Q9SVA0PIR:T09374PRIDE:Q9SVA0PRO:PR:Q9SVA0
ProteinModelPortal:Q9SVA0Proteomes:UP000006548RefSeq:NP_195668.1SMART:SM00256
SMART:SM00612SMR:Q9SVA0STRING:3702.AT4G39580.1SUPFAM:0052715
TAIR:AT4G39580UniGene:At.64220UniProt:Q9SVA0
Coordinates (TAIR10) chr4:-:18385684..18386811
Molecular Weight (calculated) 42817.30 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.17
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MNEEEAPSEQ KKTLSLVPSP TTNLFLPDDI LLSSLSRISR LYYPTFSLVS KSFRSLIASP ELYQTRSILG RTESCLYVSL RLLNDSNLRW YTLCRVPDRK
101: LTNFSGGHLL VPILSRYAPP AHWSSVVAVD YNIYAIGGPI NDAPSSSVSV LDCQCEKWRE APSMRVARNY PTATVLDGKI YVAGGCEDCT SLDCIEVFDP
201: KTQTWDSVAS PGTERCERLV YKSVGIEGKY HLFGGAGHVA YDPKEGRWDS VGMDMEMGRT WVSYCVINNI LFYYNDREFK WYDYKGRFWR KLMGLERLIK
301: FLCYSRVNLA AYGEKMAVLW DTFVPSSSKN KMIWCAEITI ERHDIYEICG KTEWFDVVLR VPKSYELVHV LAATV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)