AT4G39490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.880 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 96, subfamily A, polypeptide 10 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP96A | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 96, subfamily A, polypeptide 10 (CYP96A10); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 9 (TAIR:AT4G39480.1); Has 28273 Blast hits to 28182 proteins in 1460 species: Archae - 44; Bacteria - 2431; Metazoa - 10638; Fungi - 6078; Plants - 7933; Viruses - 3; Other Eukaryotes - 1146 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18365229..18366788 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59282.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFISLFEIS IAFFCFLLFR HFLINKKTHR LCPTNWPFFG MIPGLLVEIH RVYDFITEIL EVTNLTYPCT GPCFANLDML VTVDPANIHH IMSSNFANYP 101: KGPEFKKLFD ILGDGIFNAD SELWKDLRKS AQSMMMNPEF QKFSLATSLK KLEKGLVPLL DHVAKEKLAV DLQDMFQRFT FDTTFVLATG YDPGCLSVEM 201: PEVEFARALD DAEEAIFFRH VKPEIFWRLQ GLLGLGDEKK MTKARSTLDR VCSKYIAIKR DEVSRGTNNV DSHSKDLLTS YMNLDTTKYK LLNPSDERFL 301: RDTILTFMLA GRDTTGSGLT WFFWLLIKNP EVIAKIRQEI NTALFQRSKV DDDASNNNDS DSFSPQELKK LVYLHGAICE SLRLYPPVPF QHKSPTKPDV 401: LPSGHKVDAN SKILFCLYSL GRMKSVWGED ALEFKPERWI SESGNSVHEP SYKFLSFNAG PRTCLGKEVA MMQMKSVAVK IIQNYEMKIV EGQQIEPAPS 501: VILHMKHGLK VTVTKRCLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)