AT4G38990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.700 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycosyl hydrolase 9B16 | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycosyl hydrolase 9B16 (GH9B16); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B17 (TAIR:AT4G39000.1); Has 1522 Blast hits to 1511 proteins in 198 species: Archae - 2; Bacteria - 400; Metazoa - 176; Fungi - 17; Plants - 897; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18169175..18170949 | ||||||||||||
| Molecular Weight (calculated) | 38901.30 Da | ||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||
| Length | 347 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKPLVCSFIV ILLILLPTTI SHDYSDALTK SILFFEGQRS GYLPREQRMT WRHNSALNDG KNLNVDLVGG YYDAGDNIKF HFPMAFTTTM LAWSAIDFGS 101: YMSPADLRDN LVALRWGSNY LLKTVSQLPN RIFVQVGEPT PDHQCWERPE DMDTPRTAYA LEAPKPASDL AGEIAAALAA ASIAFKRFDP RYSKLLLDNA 201: LRTFDVNGYE DELLWGAAWL RRATGKDSYI KYLVENRQSF GSDSNYFEFG WDNKVGGVNV LVAKEVFEKN VAAIAPYKDT AEKLMCSFFL ETPGAHMSYS 301: PGGLLYKPGS SQLQNTVALS FLLLTYANYL SKSSQQPLQI LSTTPLW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)