AT4G38590.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.644 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : beta-galactosidase 14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
putative beta-galactosidase (BGAL14 gene) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 3072 Blast hits to 2969 proteins in 587 species: Archae - 15; Bacteria - 892; Metazoa - 685; Fungi - 433; Plants - 695; Viruses - 19; Other Eukaryotes - 333 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18036116..18040928 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119551.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1052 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKSRTRYLIA ILLVISLCSK ASSHDDEKKK KGVTYDGSER NFIDHKWKKR ASFLWFCSLP SKHTSRKHMW PSIIDKARIG GLNTIQTYVF WNVHEPEQGK 0101: YDFKGRFDLV KFIKLIHEKG LYVTLRLGPF IQAEWNHGGL PYWLREVPDV YFRTNNEPFK EHTERYVRKI LGMMKEEKLF ASQGGPIILG QIENEYNAVQ 0201: LAYKENGEKY IKWAANLVES MNLGIPWVMC KQNDAPGNLI NACNGRHCGD TFPGPNRHDK PSLWTENWTT QFRVFGDPPT QRTVEDIAFS VARYFSKNGS 0301: HVNYYMYHGG TNFGRTSAHF VTTRYYDDAP LDEFGLEKAP KYGHLKHVHR ALRLCKKALF WGQLRAQTLG PDTEVRYYEQ PGTKVCAAFL SNNNTRDTNT 0401: IKFKGQDYVL PSRSISILPD CKTVVYNTAQ IVAQHSWRDF VKSEKTSKGL KFEMFSENIP SLLDGDSLIP GELYYLTKDK TDYACVKIDE DDFPDQKGLK 0501: TILRVASLGH ALIVYVNGEY AGKAHGRHEM KSFEFAKPVN FKTGDNRISI LGVLTGLPDS GSYMEHRFAG PRAISIIGLK SGTRDLTENN EWGHLAGLEG 0601: EKKEVYTEEG SKKVKWEKDG KRKPLTWYKT YFETPEGVNA VAIRMKAMGK GLIWVNGIGV GRYWMSFLSP LGEPTQTEYH IPRSFMKGEK KKNMLVILEE 0701: EPGVKLESID FVLVNRDTIC SNVGEDYPVS VKSWKREGPK IVSRSKDMRL KAVMRCPPEK QMVEVQFASF GDPTGTCGNF TMGKCSASKS KEVVEKECLG 0801: RNYCSIVVAR ETFGDKGCPE IVKTLAVQVK CEKKEGKQDE KKKKEDKDEE EEDDEDDDEE EEEEDKENKD TKDMENKNQD ILDSDSALVS DLGFGPFSTV 0901: VVNVPLIGGA APPQPRFNLM PPSNYVAGLG RGAAGFTTRS DIGPARANGD GNADVNHKFD DFEGHDAGLF ANAESDDQDK EADAIWDAID RRMDSRRKDR 1001: REAKLKQEIE NYRASNPKVS GQFVDLTRKL HTLSEDEWDS IPEIGNYSHR LY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)