AT4G38390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.449 plasma membrane 0.299 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : root hair specific 17 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
root hair specific 17 (RHS17); CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G20550.1); Has 829 Blast hits to 827 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17976042..17978380 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62875.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 551 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLKLKKRD NGAEPDKKKL VIAGIRHQLL LLLRRRHRLF PLVSAVSGCL LLILFSFSTL SPPPLIHHNN QVAVEPNPTT PFRVPENGGR SDRQLWSSRL 101: SNLYYACSNA TDTFQVTDTR SQTNRYLLIA TSGGLNQQRT GIIDAVVAAY ILNATLVVPK LDQKSYWKDT SNFEDIFDVD WFISHLSKDV KIIKELPKEE 201: QSRISTSLQS MRVPRKCTPS CYLQRVLPIL TKKHVVQLSK FDYRLSNALD TELQKLRCRV NYHAVRYTES INRMGQLLVD RMRKKAKHFV ALHLRFEPDM 301: LAFSGCYYGG GQKERLELGA MRRRWKTLHA ANPEKVRRHG RCPLTPEEIG LMLRGLGFGK EVHLYVASGE VYGGEDTLAP LRALFPNLHT KETLTSKKEL 401: APFANFSSRM AALDFIVCDK SDAFVTNNNG NMARILAGRR RYLGHKVTIR PNAKKLYEIF KNRHNMTWGE FSSKVRRYQT GFMGEPDEMK PGEGEFHENP 501: ASCICRTSEA RVKEKAKHVN EDDSSEYSEI GNVPISSRSD LDHSQFDEVI F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)