AT4G38300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.722 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycosyl hydrolase family 10 protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 10 protein (TAIR:AT4G38650.1); Has 1908 Blast hits to 1902 proteins in 430 species: Archae - 10; Bacteria - 1128; Metazoa - 20; Fungi - 351; Plants - 265; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17944556..17945491 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32105.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 277 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWFPLNTHFQ ARKRAVTIHV SKENGESVEG AEVTVEQISK DFPIGSAISK TILGNIPYQE WFVKRFDATV FENELKWYAT ESDQGKLNYT LADKMMNLVR 101: ANRIIARGHN IFWEDPKYNP DWVRNLTGED LRSAVNRRIK SLMTRYRGEF VHWDVSNEML HFDFYESRLG KNVIDSLATL FFNDFNVVET CSDEKSTVDE 201: YIARVRELQR YDGIRMDGIG LEGHFTTPNV ALMRAILDKL ATLQLPIWLT EIDISSSLDH RSQVHKSLFS GLVQFAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)