AT4G38070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 194780 Blast hits to 83936 proteins in 3334 species: Archae - 2743; Bacteria - 33979; Metazoa - 84944; Fungi - 15379; Plants - 11807; Viruses - 735; Other Eukaryotes - 45193 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17876535..17882569 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 175048.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||
| Length | 1513 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEKVYEELDE VKAVNEKLRI DYRNKTELLE NLKKVQNEQL IEIREARLVN EKHGFEIEEK SREIAELKRA NEELQRCLRE KDSVVKRVND VNDKLRANGE 0101: DKYREFEEEK RNMMSGLDEA SEKNIDLEQK NNVYRAEIEG LKGLLAVAET KRIEAEKTVK GMKEMRGRDD VVVKMEEEKS QVEEKLKWKK EQFKHLEEAY 0201: EKLKNLFKDS KKEWEEEKSK LLDEIYSLQT KLDSVTRISE DLQKKLQMCN GALTQEETRR KHLEIQVSEF KAKYEDAFAE CQDARTQLDD LAGKRDWEVA 0301: ELRQTLSMKD AYFKEMKYEN GKLEQENREL LGSLKELQEA TIQGSGNSAL SKLKNKFRNL ENIHKNCSAN LRSKEAEWSS QVEKMVEEIN DYKLQLQSKE 0401: AALKEVELEL ENCRSSTAKM RLQYEEISIM FLVLSRTVSE AQSRLANAKD KQIKDEKREG NCYSLLMEQL DQKNAALAKA QMEIKEERES VACLLKRIEM 0501: LDLFENQNIQ MQKEVERFKE MVEESSRFQT QMQEKMKEAE NDYEEKLLQV CDALDNTNID LVAEREKVVS LTRQIESLGT VKEKNLVMEK ETQEYKEMLE 0601: ESEKCRVLLE EQISQLESDS NENIRELCSK VDIAYAKLAE EVEKTASLVR KSESIDLNEE HRQRELDHYK EMLEESTKTQ LLLQEKVVDV ENDSKRKLAD 0701: VSEALEIANS ELSDKTSEVF QIEFQLWVWK SIAKRLKAEL EQNQNLRKRV EASLLEQVGV GEAIKQEKNE LVHKLKVISH ARSSDSEKKE SLMRDKDEML 0801: ESLQREVELL EQDSLRRELE DVVLAHMIGE RELQNEREIC ALQQKDQDLC EVKHELEGSL KSVSLLLQQK QNEVNMLRKT WEKLTARQIL TAVETESKKM 0901: MIIELEGEIS SLSQKLETSN ESVSCFRQEA TKSRAELETK QTELKEVTTQ MQEKLRTSEA EKTELVKEVA SLSTEKRNLL SFISEMEDGM LKLYDGDTKL 1001: MKTLERVTQC CDGFGKENNN GETIGSPRLA MKHEEDVVTE DREGASQNRT APDLKPIETC RKLLKSREFL SVRYIIQVNQ LLKSKRHDDD DQFEQVEAIC 1101: DLLIAAENRL PNGLKDYYGM IRANRFGPVL LEDFEKLTKL LDKKHNYFPF SQEAADKASL AWSLLSKPPI KAHYDLAISA FFGECSKVKR KIFIPKKQIE 1201: VVVISDDDDE EEFSCLKISL NRYYYYDYLL FVFIYIYIHN KFNIPSNVLL SPSLCVTMVL LHHVSLSHYQ NSSSLFSSSS ESILCLFLVL CVMQLEQGMR 1301: PISRCYNPTA YSTTMGRSFF AGAATSSKLF SRGFSVTKPK SKTESKEVAA KKHSDAERRR RLRINSQFAT LRTILPNLVK QDKASVLGET VRYFNELKKM 1401: VQDIPTTPSL EDNLRLDHCN NNRDLARVVF SCSDREGLMS EVAESMKAVK AKAVRAEIMT VGGRTKCALF VQGVNGNEGL VKLKKSLKLV VNGKSSSEAK 1501: NNNNGGSLLI QQQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)