AT4G38030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rhamnogalacturonate lyase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT2G22620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17863206..17866730 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76625.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.65 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 667 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSQKKIASL FICFLLLLLL PLSFSKPTRN LDGISARAPT VQQIRSRHHG TREVIVDNGI IRVSFSNPQG LITGIKYKGI DNVLHPHLRD RGYWDITWQG 101: TNIRQGGLDR IEGTNFRIIT QTQEQVEISF SRTWEDGHIP LNVDKRYIIR RNTSGIYMYG IFERLPEWPE LDMGLIRIAF KLNPERFHYM AVADNRQREM 201: PTEDDRDIKR GHAKALGYKE AVQLTHPHNS MFKNQVDDKY QYTCEIKDNK VHGWISTKSR VGFWIISPSG EYRSGGPIKQ ELTSHVGPTA ITTFISGHYV 301: GADMEAHYRP GEAWKKVLGP VFIYLNSDST SNNKPQDLLW EDAKQQSEKE VKAWPYDFVA SSDYLSRRER GSVTGRLLVN DRFLTPGKSA YVGLAPPGEA 401: GSWQTNTKGY QFWTKTNETG YFTIENVRPG TYNLYGWVPG FIGDFRYQNL VNVAAGSVIS LGRVVYKPPR NGPTLWEIGV PDRTAREYFI PEPYKDTMNP 501: LYLNHTDKFR QYGLWQRYTE LYPTHDLVYT VGVSNYSQDW FYAQVTRKTG DLTYVPTIWQ IVFHLPYVNS RGSYTLQVAL ASAAWANLQV RINNQNSWPF 601: FSTGTIGKDN AIARHGIHGM YRLYTIDVPG RLLRTGTNTI YLRQPKAQGP FEGLMYDYIR LEEPSRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)