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AT4G37890.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 1867 Blast hits to 1074 proteins in 263 species: Archae - 0; Bacteria - 369; Metazoa - 130; Fungi - 203; Plants - 355; Viruses - 0; Other Eukaryotes - 810 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2304eggNOG:ENOG410IEK7EMBL:CP002687EnsemblPlants:AT4G37890
EnsemblPlants:AT4G37890.2entrez:829945ExpressionAtlas:F4JSV2Gene3D:3.30.40.10
Gene3D:3.40.50.410GeneID:829945GO:GO:0008270Gramene:AT4G37890.2
hmmpanther:PTHR10579hmmpanther:PTHR10579:SF59InterPro:IPR001841InterPro:IPR002035
InterPro:IPR013083iPTMnet:F4JSV2PaxDb:F4JSV2Pfam:PF00092
Pfam:PF17123Pfscan:PS50089PROSITE:PS50089ProteinModelPortal:F4JSV2
Proteomes:UP000006548RefSeq:NP_849514.1SMART:SM00184SMART:SM00327
SMR:F4JSV2STRING:3702.AT4G37890.1SUPFAM:SSF53300SUPFAM:SSF57850
TAIR:AT4G37890tair10-symbols:EDA40UniGene:At.31220UniGene:At.49769
UniProt:F4JSV2
Coordinates (TAIR10) chr4:-:17812812..17815031
Molecular Weight (calculated) 78062.50 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.45
Length 711 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKSSISSSK CGICLQSAKA GRGTAIFTAE CSHTFHFPCV ASRAGDRNLL SDCPVCGASW RETSLLPLSL
201: SSSLHESGSE SDSKIRESKN NNKSLRVYND DEPLISSPIS RTGFNTIPES NEDEEEEDND DGEFKGFYVN TPSPLTTKKM LTDSVTGHVD VKLSSEAAIV
301: AVGRGNETYS VLMKIKSPSL PTARRSPVDL VTVIDVSGGN IEMVKRAMRQ VISSLRETDR LSMVSFSSSS KRLTPLRRMT ANGRRLARRI VDDISGDGDG
401: MSVNDAVKKA AKVIEDRRQK NLFTTIFVLT DRNRNSAHQA QLAQPDFVTS TRFSHLEIPT HTIWLGACNH ALPEDVFAKR IKSLLSLSVQ DLTLNLGLVS
501: GSGQGKVTSV YSLSGRPVWL GSGLIRLGDM YGDEEREVLV ELKSPSSSRS QRIMTVRSRH VDPTTQEIKN YEDRALMIPR PTTVRSSDPS IARLRNLHVS
601: TRAVAESRRL VEVNDYSGAE RMLTSARALL VQYGLSSSDS CLRGLEAELA DLNRLRGRHV AVKSPEPVVQ KSEPLTPTSA WRAAERLAKV AIMRKHMNRV
701: SDLHGFENAR F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)