AT4G37630.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclin d5;1 | ||||||||
| Curator Summary (TAIR10) |
core cell cycle genes | ||||||||
| Computational Description (TAIR10) |
cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D1;1 (TAIR:AT1G70210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17679497..17680788 | ||||||||
| Molecular Weight (calculated) | 36927.60 Da | ||||||||
| IEP (calculated) | 5.15 | ||||||||
| GRAVY (calculated) | -0.41 | ||||||||
| Length | 321 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF 101: DLFLHKRFIG KDETWAMRLL SVACLSLAAK MEERIVPGLS QYPQDHDFVF KPDVIRKTEL LILSTLDWKM NLITPFHYFN YFLAKISQDN HSVSKDLVLL 201: RSSDSLLALT KEISFTEYRQ FVVAAVTTLL ASSSTSSDIR LTREEIANKF GSISWWTSNE NENVYLCYQR TLEIEERKHM TPPPEIAVSR EPPASGSGAK 301: RRLSFDDSDQ SSPPAKRMRR L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)