AT4G37510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribonuclease III family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48121.2); Has 794 Blast hits to 789 proteins in 319 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 39; Plants - 42; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17626259..17628854 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62435.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 537 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELCSSSPSS SLLRICSSSA PEISFSSSIS QFPSKTQSIL TKSRFQNLRI CASVTAETQG LPRDSPQRLL KELAQRKTAT GPKKKVPPKR FILRPPLDDK 101: KLAERFLNSP QLSLKSFPLL SSCLPSSKLN NADKTWIDEY LLEVKQALGY SLEPSESLGD DNPAKHFDTL LYLAFQHPSC DRARARHVKN GHSRLWFLGQ 201: YVLELALTEF FLQRYPRESP GPMRERVFAL IGKRYLPKWI KAASLQNLIF PYDDMDKLIR KEREPPVKSV FWALFGAIYL CFGMPEVYRV LFEVFGMDPD 301: ADECQPRSRR QLEDVDYVSV EFEGKKLGWQ DIATYKPPED ALFAHPRLFR ACVPPGMHRF RGNIWDFDSK PKVMQTLGYP LTMNDRIKEI TEARNIELGL 401: GLQLCFLHPS KHKFEHPRFC FERLEYVGQK IQDIAMAERL LMKHLDAPGK WLQEKHRRLL MNKFCGRYLR EKRLHNFIIY SEEVHDRYEH NRRLRNPATT 501: AVQQAIHGLA YTIYGKPDVR RLMFEVFDFE QIQPKAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)