AT4G37060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.680 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PATATIN-like protein 5 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Patatin-related phospholipase A. Expressed weakly in roots, cotyledons, and leaves but is transcriptionally induced by auxin. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PATATIN-like protein 5 (PLP5); FUNCTIONS IN: phospholipase activity, nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root, leaf; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2144 Blast hits to 2133 proteins in 387 species: Archae - 0; Bacteria - 506; Metazoa - 233; Fungi - 187; Plants - 895; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17461573..17463734 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45644.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENESPSKKN MPPSCGTLVT ILSLDGGGVR GIIAGVILAY LEKQLQELDG EHVRVADYFD VIAGTSTGGL VTAMLTAPDE NGRPRFAAKE IVPFYLEHCP 101: KIFPQPTGVL ALLPKLPKLL SGPKYSGNYL RTTLGKLLGE TKLRQTLTNV VIPTFDIKTL QPTIFSSYQA LTDPSLDVKV SDICIGTSAA PTYFPPYYFS 201: NEDSQGKTRH FNLVDGGVTA NNPTLVAMTA VTKQIVNNNP DMGTLNPLGY DQFLVISIGT GSAKKEERYS AKKAAKWGII SWLYEDGTTP ILDITFESSR 301: DIVHYHSSVV FKALQSEDKY LRIDDDTLEG DASTLDLSTK SNLENLIKLG EKMLTNRVMQ MNIDTGTYEP AAENINNDEQ LKRFAKILSE ERKLRRKRSD 401: KMTKDSSIGS QEIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)