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AT4G36390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Methylthiotransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, transferase activity, catalytic activity; INVOLVED IN: RNA modification, tRNA modification; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Methylthiotransferase, conserved site (InterPro:IPR020612), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1); Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356; Bacteria - 9631; Metazoa - 288; Fungi - 1; Plants - 108; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-737-MONOMERBioGrid:15073eggNOG:COG0621eggNOG:KOG2492
EMBL:AL161589EMBL:BT002022EMBL:BT008395EMBL:CP002687
EMBL:Z99708EnsemblPlants:AT4G36390EnsemblPlants:AT4G36390.1entrez:829791
Gene3D:3.80.30.20GeneID:829791Genevisible:Q8H0V1GO:GO:0000079
GO:GO:0009451GO:GO:0016740GO:GO:0046872GO:GO:0051539
Gramene:AT4G36390.1hmmpanther:PTHR11918hmmpanther:PTHR11918:SF43HOGENOM:HOG000224767
InParanoid:Q8H0V1InterPro:IPR002792InterPro:IPR005839InterPro:IPR006638
InterPro:IPR007197InterPro:IPR013848InterPro:IPR020612InterPro:IPR023404
InterPro:IPR023970iPTMnet:Q8H0V1KEGG:ath:AT4G36390MINT:MINT-8070430
OMA:GKSDRGHPANTHER:PTHR11918PaxDb:Q8H0V1Pfam:PF00919
Pfam:PF01938Pfam:PF04055Pfam:Q8H0V1Pfscan:PS50926
Pfscan:PS51449PhylomeDB:Q8H0V1PIR:E85429PRIDE:Q8H0V1
PRO:PR:Q8H0V1PROSITE:PS01278PROSITE:PS50926PROSITE:PS51449
ProteinModelPortal:Q8H0V1Proteomes:UP000006548RefSeq:NP_195357.2scanprosite:PS01278
SMART:SM00729SMR:Q8H0V1STRING:3702.AT4G36390.1SUPFAM:SSF102114
TAIR:AT4G36390TIGRfam:TIGR00089TIGRfam:TIGR01574TIGRFAMs:TIGR00089
UniGene:At.27708UniProt:Q8H0V1
Coordinates (TAIR10) chr4:-:17194746..17197054
Molecular Weight (calculated) 71725.30 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.35
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLSSLS SILSNPHGCS LCFKASTQRC FALRFLSSKA THASSSSSSA LLPRCRSSTH RLTQKPINRK KGFSLNLSRS FSISQIASSG KFDGPSLHQF
101: VSNAQAHASL TTPETESEST LDSDIASKGR IYHETYGCQM NINDMEIVLA IMKNSGYKEV VTDPESAEVI FVNTCAIREN AEQRVWQRLN YFWFLKREWK
201: VNAATGRAKS LKPPKVVVLG CMAERLKDKI LDSDKMVDVV CGPDAYRDLP RLLEEVDYGQ KGINTLLSLE ETYADISPVR ISENSITAFV SVMRGCNNMC
301: AFCIVPFTRG RERSRPVESI IREVGELWES GVKEVTLLGQ NVNSYNDDSA DRESGANWEY SEGFSSRCKV KNMGLRFADL LDRLSVEFPE MRFRFTSPHP
401: KDYPDELLYL MRDRHNICNL IHLPAQSGNS RILEQMRRGY TREAYLDLVK KIRSIIPDVA ITSDFITGFC GETEEEHQET LSLVRAVGYD MAYMFAYSMR
501: EKTHAHRNYT DDVPEEVKQR RLTELIDAFR ETTGPCYDSQ VGSTQLVLVE GPNKRAPETE LIGKTDKGHR VSFVTKPLFD KACLLDGDDL KRNPGIGDFV
601: EVQIEKSTRA SLFGEALAIS KMSLFHDVGV VDAVVASCAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)