AT4G35733.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.869 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein with a domain of unknown function (DUF295) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT1G44080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16934426..16935502 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41401.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.00 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 358 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEATVWSDL PGELLDHIAN GLFSKVELLR FRSICKTFRS AVDSDKNFLD HLKRNRRRLL SPYSTGKTCS LSPAAFYRVV LSSYPDKGWL IKLQDAYVSS 101: QKQLLSPLSR FSIKSSGKTL DLLEFTVSEI HQSYDVEYLY YNSTRASFNF ARVVLAEDFV FIVDNYKKIW LCNSNESDSH WVRIMDEEVK LFSDIVFHKG 201: YMYALDLTGA VWWISLSEFG IFQFGPSSTP MDYCDIDECK DKRFVEYCGD LCIVHRFSRK FRIKRVDIDM TVGFKVYKMD EELVEYVEVK SLGDKAFVMA 301: TDSCFSVLAR EYYGCLENSI YFTEQNNVKV FKLGDGSITN MVDSSFQSCF QMLIPPLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)