AT4G35560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), Lethal giant larvae (Lgl) like, C-terminal (InterPro:IPR013905); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G05570.2); Has 743 Blast hits to 724 proteins in 180 species: Archae - 0; Bacteria - 29; Metazoa - 366; Fungi - 139; Plants - 91; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16881562..16886878 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116366.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 1049 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFVKKLVEIA AKKPGGSSSE GLRANDVEPR IALHYGIPSG SHLFAYDPFQ KILAVSTKDG RIKLFGKDQT QALLVSEETS TSRFLEFVQN QGILLNVNSK 0101: NQIEVWDLDK KLLSHVHVFN GEITSFRVMQ HTPYFYVGDS SGNVSVFKIE QDSNQVIQLE YTIPYLASNG SPIEASEDTS VVSILPQLTA ESKRILLVFS 0201: SGFIALWDIK ESKPILKTGV HGMVKQDTKK ATCACWVCPS GSRVSVGYSN GDILIWSIPS KGECSPESSA MICKLNLGYK SEKIPIASLK WVYAEGKASR 0301: VYVIGSSSNS LQVVLLNEQT ETRMIKLGLH VSEPCADMEM IIADVNEQSK HKQDFLFVLG KSGRVYAYDD YMIEKYLIQS QSKSSPSLPK ETVVKLPFSD 0401: SSSITVGKFL TNPSHLLNLS DEDYAQLAKD AVPFLPFHTV PKESSRSAHF PGFTKVKNVY ITGHCDGTIS VWDMTCSFPI LVLFLKEQID QDVSSRGNAA 0501: LTALHYDSNS RLLVSGDHNG MVRLYRFKPE PYLTENSFIP FQGSLKKGNN HIVQSVKYIK LTGSITCIQK SQNSKHLAIG SDQGHVSLVD IEEANVLYTK 0601: HIASDICPGI ISLQFESCIV QGFEKNVLVV AMRDSSVFAL DSDTGNMIGT NMIKPKKPFK VLYMQILDGK QDTSGNGFDT SRESTVEEIS IRQPSVLVCS 0701: EKAIYIYSLA HVVQGVKKVL HKKKFSSSPI CSASTFYGTS GVGLTLVFTD GTVEIRSLPE LSQLKQTSIR GFTYSSPKPN SLPEITISAS WDGDLVMVNG 0801: DDELIVSSVL PQKETFRLVE SMNRVYKKDN SVCHEGIITS SSPREKKSMF GSVFKTKSKR TTDTEPESSK ETIEELSKIF STANFPWNNN VENSREINTI 0901: TRVEDEEELD IDDIDIDDHH PNQQQQEKPK EQGILSGLSK QKMANRFSNF KGKLKQMAAK NEKSVVTNDE KHEEKNGATV DQIKKKYGFT SSDEMGAAKM 1001: AQSKLQDNLK KLQGISLRTT EMEDTAKSFS STAKELLNAV EFNKQSSKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)