AT4G35270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant regulator RWP-RK family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT2G17150.1); Has 705 Blast hits to 622 proteins in 59 species: Archae - 0; Bacteria - 9; Metazoa - 13; Fungi - 14; Plants - 585; Viruses - 3; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16777657..16780824 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107284.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 963 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGGRGGGDG NFLPNSNFGV FSDSAMDMDF MDELLFDGCW LETTDGKSLK QTMGQQVSDS TTMNDNNNNS YLYGYQYAEN LSQDHISNEE TGRKFPPIPP 101: GFLKIEDLSN QVPFDQSAVM SSAQAEKFLL EESEGGRRYW IAPRTSQGPS SSVKERLVQA IEGLNEEVQD KDFLIQIWLP IQQEGKNFLT TSEQPHFFNP 201: KYSSLKRYRD VSVAYNFLAD EDSKESVGLP GRVFLKKLPE WTPDVRFFRS EEYPRIKEAE QCDVRGSLAL PVFERGSGTC LGVVEIVTTT QKMNYRPELD 301: NICKALESVN LRSSRSLNPP SREFLQVYNE FYYAALPEVS EFLTLVCRVY DLPLALTWAP CARQGKVGSR HSDENFSECV STVDDACIVP DHQSRHFLEA 401: CSEHHLLQGE GIVGKAFNAT KLFFVPEVTT FSKTNYPLAH HAKISGLHAA LAVPLKNKFN SSVEFVLEFF FPKACLDTEA QQDMLKSLSA TLQQDFRSLN 501: LFIDKELELE VVFPVREEVV FAENPLINAG TGEDMKPLPL EEISQEDSSW ISHMIKANEK GKGVSLSWEY QKEEPKEEFM LTSGWDNNQI GSGHNNFLSE 601: AEQFQKVTNS GLRIDMDPSF ESASFGVGQT LLGSRRPGEK RRTKTEKTIG LEVLRQYFAG SLKDAAKSIG VCPTTLKRIC RQHGITRWPS RKIKKVGHSL 701: KKLQLVIDSV QGVQGSIQLD SFYTSFPELS SPHMSGTGTS FKNPNAQTEN GVSAQGTAAA PKSPPSSSCS HSSGSSTCCS TGANQSTNTG TTSNTVTTLM 801: AENASAILKR ARSEVRLHTM NQDETKSLSR TLSHKTFSEH PLFENPPRLP ENSSRKLKAG GASKVKATFG EAKVRFTLLP TWGFRELQHE IARRFNIDNI 901: APFDLKYLDD DKEWVLLTCE ADLEECIDIY RSSQSRTIKI SVHEASQVKL GGSFGSIGLG PSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)