AT4G34950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.537 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G16660.1); Has 3379 Blast hits to 3250 proteins in 882 species: Archae - 26; Bacteria - 1593; Metazoa - 4; Fungi - 302; Plants - 604; Viruses - 0; Other Eukaryotes - 850 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16642544..16644759 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60865.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.56 | ||||||||||||||||||||||||||||||||
| Length | 567 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFGTSSSSS SSSALKWLGF VTAVWVQSIS GNNYTFSNYS GALKSLMNLT QLELNSLSVA KDVGKAFGIL AGLASDRLST PVILLIGSFE GLLGYGVQWL 101: VVSRTIQPIP YWQMCVFLCM GGNSTTWMNT AVLVTCIRNF RRNRGPVSGI LKGYVGLSTA IFTDLCNALF SSDPASFLVL LSVVPFAVCL TAVFFLREIP 201: PSTTFAEDNE ESKYFAVFNI VAVVVAVYLQ SYDIIGIKTG AFSIAFASIL LILLASPVAV PFHAFIRSKV HDEQDVEGRI DEPLLRSGSE IEVEETIVGA 301: AAAADNELPP SLKPLSNEEE ENHGTIVTTE KKRPVLGEEH TIMEAMLTVD FWVLFVSFLC GVGTGLAVMN NMGQIGLALG YTDVSIFVSM TSIWGFFGRI 401: LSGTISEHFI KKAGTPRPLW NAAAQIIMAV GYLLMALALP GSLYIGSMVV GVCYGVRLAI TVPTASELFG LKYYGLIYNI LILNMPLGSF LFSGLLAGLL 501: YDAEATPTPG GGNTCVGAHC FRIVFIVMAF ASIIGVGLDL LLAYRTKGIY AKIHASKKTK KSGGNLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)