AT4G34320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.410 plasma membrane 0.261 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF677) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, sepal, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT4G34330.1); Has 254 Blast hits to 251 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16422436..16423824 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42056.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNQTSKKSQ ETSAKSVHYT TELRSYAAAC KADTELQSFD TCLQARTSHV ISTLATGVEV RALSFDSLKE VTQCLLEMNQ EVVKVILDCK KDIWKNQEMF 101: ELVEDYFENS LKTLDFCAAL EKGLRRARDS HLLILVALQQ FEDESLVQGG NGYKKTLEEL KNFKDAESPF NEDFFKMFQS VYKQQMLMLE KLQHRKNKLD 201: KKLKCIHTWR KLSSIIFVAT FATVLICSVV AAAMAAPPVA AALAAATAVP LGSMGKWIDS LWKNYENALK GQKEVISSMQ AGTFVAVKDL DNIRVLIERL 301: EIEITGMVKS AEFAVEHNAV KIGIDDIKKK LEVFKKNVEE LGTQADLCSR DIRRARTVIL QRIIKHPNNA SSST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)