AT4G33630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3506) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EXECUTER1 (EX1); FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT1G27510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16155560..16159094 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76538.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.92 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 684 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSLSTPPSQ NLAFSPAASA TSSRLTPSSK RSFYPHRLPD PTALCRCSSS SGSNSSSSSS SDDNPRWDSA IQDVLKSAIK RFDSVLSWYA TLDNDDGEQG 101: SENVEKIDDD WDWDRWKKHF DQVDDQDRLL SVLKSQLNRA IKREDYEDAA RLKVAIAATA TNDAVGKVMS TFYRALLEER YKDAVYLRDK AGAGLVGWWS 201: GISEDVKDPF GLIVQITAEH GRYVARSYNP RQLSTSAAGA PLFEIFLTLD GKGNYKKQAV YLKWKEIFPD VPTMPSRTLT PGRFLTSPGR KEDTGNLAVE 301: SSEDEESDNS DDDSDLLEES SGFQSFLRDM IPGVKVKVMK VTAPGRVDKD FISKVIEQIA DEEDEENDLD IEDIDVEDDT KAEIDEKNAD IELESVTDEI 401: IDNNGGREIA VKFVIGDIVD RLSGNQPLKE SLRSPANLES VENSSFYLRL EKDLNVKESK GVEGTTLVDG KGSRQSRRRI ENIMGDLAKS IEKEKKISVK 501: MLKDVGELLS LTLSQAQNRQ QLSGLTKFRR IDVTPSLDPL DGLYIGAHGL YTSEVIHLKR KFGQWKGGKE SKKPTDIEFY EYVEAVKLTG DPYVPAGKVA 601: FRAKIGRRYE LPHKGLIPEE FGVIARYKGQ GRLADPGFRN PRWVDGELVI LDGKYVKGGP VVGFVYWAPE YHFVMFFNRL RLQA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)