AT4G32950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.756 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein phosphatase 2C family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G26010.1); Has 6050 Blast hits to 6034 proteins in 372 species: Archae - 2; Bacteria - 155; Metazoa - 1422; Fungi - 719; Plants - 2524; Viruses - 5; Other Eukaryotes - 1223 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15904444..15906010 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35123.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 326 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFCFCLSSG GSTDKSQIYE ITDYGQENAV LYSDHHVVPQ NLGSVSSLAG GKGLNQDAAI LHLGYGTEEG ALCGVFDGHG PRGAFVSKNV RNQLPSILLG 101: HMNNHSVTRD WKLICETSCL EMDKRILKVK KIHDCSASGT TAVLAVKHGN QVMVANLGDS RAVMIGTSED GETKVAQLTN DLKPSVPSEA ERIRKRNGRV 201: LALESEPHIL RVWLPTENRP GLAMSRAFGD FLLKSYGVIA TPQVSTHQIT SSDQFLLLAS DGVWDVLSNE EVATVVMKSA SEAGAANEVA EAATNAWIQK 301: FPTVKIDDIS VVCLSLNKKH NPQPQI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)