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AT4G32820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 166 Blast hits to 153 proteins in 63 species: Archae - 8; Bacteria - 13; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFFGeggNOG:ENOG410XY91EMBL:CP002687EnsemblPlants:AT4G32820
EnsemblPlants:AT4G32820.1entrez:829418ExpressionAtlas:F4JV59Gene3D:1.25.40.10
GeneID:829418GO:GO:0006336Gramene:AT4G32820.1hmmpanther:PTHR15502
hmmpanther:PTHR15502:SF7InterPro:IPR011990InterPro:IPR013026InterPro:IPR033053
ncoils:CoilPANTHER:PTHR15502:SF7PaxDb:F4JV59Pfscan:PS50293
PRIDE:F4JV59PROSITE:PS50293ProteinModelPortal:F4JV59Proteomes:UP000006548
RefSeq:NP_195008.6STRING:3702.AT4G32820.2SUPFAM:SSF48452TAIR:AT4G32820
UniGene:At.54582UniProt:F4JV59
Coordinates (TAIR10) chr4:-:15831679..15841454
Molecular Weight (calculated) 210752.00 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.34
Length 1863 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFSIAAINDT ESTEKWEPLA PSKEAQEFHL SQTYHDGLLK LQAKDYDKAR ELLESILKDP IITNSKVETI ANDNHLHHLR FLALKNLATV FLELGSSHYE
0101: NALNCYLQAI DLDAKDSVLW NHLGTLSCSM GLLSISRWAF EQGLLCSPNN WNCMEKLLEV LIAVGDEVSC LSVANLILRH WPSHSRALHV KHCIEDTDSA
0201: PFAPKGIDKL EPQHVRLKFL GKRKVSDMNQ DMDATSKKLR KRVQFKLPEA SWVALLNILI GIVHPSRETV GISADIPITI ELSLSTEAVM QGMKKKDHCV
0301: DSDSSNVSVK DCNIERESGG SVKEKEPVFS EEHPQERRST RLERLRNQKP EKEGLEFDNS KDPSSDILQY LEKFVLKRGF DRESAGSFCN EESDPISEHA
0401: VVSNFVKENL ENYGAYHMGH LLLEYIANKC EHVLSRETAL KILELEKLTR HWGRDRKPEC SLFLAELYHD FDSKRSDIPD APSCMVEVTY HLSKIIESVS
0501: LDYAIDSTPS SRGKMFSDSS FKSFQGDEAA KEVLDYDTRS FWARYFWLSA RLSILEDNKA KALEEYLRCL SLLGREGIGE APVLIQRPHC RRVRELTINR
0601: IIHEINLLKI DFLLENNIPE MMEKEFYSEC VNLLAPLLFP DKDILPAYAV KTEEGISSVE LSALEVLIKA CQKSKPIDVE VYMNCHRRKL QVLLDSTGTG
0701: ESVVTPKTSS KNSSESWDHL VAEEVKAILL CISQVKNSLD QSGNSDDMVA PRDCVAGIQA LLLRVMSNIV RHFFSKRYSD SQNADGIEEE KKSCFLDAAI
0801: GFCKLQHLDA TISTKYQVEL IIRLHDLLAE YGLCCAGKNC AGEEGAFLRF AIKHLLAVDM KVKSSINSPD GLGHDMGLPD KLCRNEVKSF LEEVHVEKNE
0901: NNKTESKKDG SEEQVGYREK EQSEQQSKQI PEHTEEVAEE EKDELELLIN NALDQCFFCL YGLNLRVDGS YEDELAVHKN TSRGDYQTKE QCVDVFQYIL
1001: PYAKASSRTG LVKLRRVLRA IKKHFSQPPD DLLIGNVIDK FLDDPELCED KLSYEAGSEG FLETITKCLI PSRTLSEYKI SLLHSSDPYL DVYRNLYFLL
1101: AQSEEVSASD KWPGFVLTKE GEEFEQQNTN LFKYDLLYNP LRFESWEKLG NIYDEEVDLL LNDGSKHINV VGWRKNSALS QRVETSRRRS RRCLLMSLAL
1201: ANSPDQQSEI HELLALVYYD SLQSVVPFYD QRSVLPSKDA TWTRFCENSM KHFNKAFSHR QDWSHAFYMG KLSEKLGHSY EISLSYYKQA MTLNPSAVDP
1301: VYRMHASRLK LLNACGKQNL EALKVLASYC FDESIKDTAM TIIGTTTFGS SRTLEEAQDG NLEACYAKSG EGSIQMEGVW HMLYNDSLSA LGICVEGDLK
1401: HFHKARYMLA QGLYRRGGSS DLQRAKEELS FCFKSSRSSF TINMWEIDGM VKKGRRKTPG LAGNKKALEV NLPESSRKFI TCIRKYLLFY LRLLEETEDV
1501: NTLERAFNSL RSDKRFSLCV EDLVPVAIGR YVKALVSSMS RVESAGAIIN PDSQLEKIFS LFIEQGSIWP DICNFPETRG PETSESSLYR YLHQYIVSLE
1601: LDNKVETLET INEKIRKRFK NPKLSNSFSA KVGRHASLAW CRALIISLAL ITPLQPVSSE ESQAITPSFG LLENRRVLCV DLQSEFWSSS FEDPLESQML
1701: EAKWRPVLSK IKNVLIFNKV VEGNLEIANS LLKSCYNFFR ETASVTLPSD INLYFALPRL APAGELLPGN EGVEVIDVSI PRKLLLWAYT LFHGHCGSIS
1801: QVVKYMEENT KPKMKRGAST SSVVPSVQSG GTSEPEPAPK VVQVIIPDSL GGDSCGSTPA APL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)