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AT4G32380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G32375.1); Has 4130 Blast hits to 4117 proteins in 491 species: Archae - 4; Bacteria - 1241; Metazoa - 14; Fungi - 1289; Plants - 1447; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5434eggNOG:ENOG410IK0FEMBL:CP002687EnsemblPlants:AT4G32380
EnsemblPlants:AT4G32380.1entrez:829373Gene3D:2.160.20.10GeneID:829373
GO:GO:0004650GO:GO:0005576GO:GO:0005975GO:GO:0016829
GO:GO:0071555Gramene:AT4G32380.1hmmpanther:PTHR31736hmmpanther:PTHR31736:SF10
InParanoid:F4JUA6InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050
InterPro:IPR012334KEGG:ath:AT4G32380OMA:INANFPIPaxDb:F4JUA6
Pfam:PF00295PRIDE:F4JUA6ProteinModelPortal:F4JUA6Proteomes:UP000006548
RefSeq:NP_194964.2SMART:SM00710SMR:F4JUA6STRING:3702.AT4G32380.1
SUPFAM:SSF51126TAIR:AT4G32380UniGene:At.50389UniProt:F4JUA6
Coordinates (TAIR10) chr4:+:15633641..15635420
Molecular Weight (calculated) 38378.30 Da
IEP (calculated) 8.02
GRAVY (calculated) -0.17
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MANDWGRNKL DCWLCFEKVT GLVLTGSGVL NTHGESWWSS VALQSRPVAV RFFGCQNILY NGLTQINSPR NHITILDSNN ATLSNLHLIA PASSPNTDGI
101: DISHSQNINI MSSTIKTGDD CVAIKRNSYN INVTYVTCGP GHGISIGSLG EGGASEVVQN VNVRHCTFTG TQNGARIKTW PGGQGFVKNI LYEDITLINA
201: NFPIIIDQQY RDNAGQYKQS AGATAVKVSD VTFRSFTGTC AAPIAIKLDC DPNTGCDNIV MEQINIASSS PKTPLTSYCK FAHVVSRFVS IPITCSFHTE
301: DSQPASLNPQ PSAPYAISPT TPHTQPHAPT TQPPLFFRFY TNFKAFLGRL GRNC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)