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AT4G32200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-binding HORMA family protein
Curator
Summary (TAIR10)
meiotic asynaptic mutant 2, homologue of ASY1
Computational
Description (TAIR10)
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT4NeggNOG:KOG4652EMBL:CP002687EnsemblPlants:AT4G32200
EnsemblPlants:AT4G32200.1entrez:829353GeneID:829353GO:GO:0007130
Gramene:AT4G32200.1hmmpanther:PTHR31099InParanoid:F4JTJ9InterPro:IPR003511
iPTMnet:F4JTJ9KEGG:ath:AT4G32200ncoils:CoilPaxDb:F4JTJ9
Pfam:PF02301Pfscan:PS50815PRIDE:F4JTJ9PROSITE:PS50815
ProteinModelPortal:F4JTJ9Proteomes:UP000006548RefSeq:NP_194947.2STRING:3702.AT4G32200.1
SUPFAM:0040144SUPFAM:SSF56019TAIR:AT4G32200tair10-symbols:ASY2
UniGene:At.54575UniProt:F4JTJ9
Coordinates (TAIR10) chr4:+:15548840..15554962
Molecular Weight (calculated) 158534.00 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.50
Length 1399 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVVVSKNNEQ QSLILTTELL RTAIFNISYI RGLFPVRYFK DMSVPALDLK MKKLMPMDAE SRRLIGWMEK GVYDALHKKH LKKLIFYICE TVDGPLIEEY
0101: IFSFSYSDSD SQDVRMNINI TGINTYGGTL NSTADNSTAD MTLNQMSSVD EDFGQNARRS NAFVTYQRFS VYISFHIANY RLCYFFASVQ RTILMKLLYY
0201: EYVPPDYQPP FFRGCSEEEE AQYVWPKIPL RMEIGNVNSQ HHVLTVKVKS VLDPYDPCED ENDNMQDDER SKGPDSLHDD QPCKVFTKPS KLILTENKDA
0301: DHGEVNEEKL LLITPICEIL QDVKQDQVEH QLAKVKDTKG RPASIVQNPI LQSHEYDIRR LKARLQRLER HISVPDSPQE GIRKWFAAVS SQLFYKVMEA
0401: CTRRKPILGD AILSSTVKVQ NFNAKICSKL LKKPASIYRK KHFTLNSASL RISGLAGSIF AWAVGFCLFS AQIGHVFVQP KTRSSESKPK VTMEELEEKL
0501: TPPSSEPKSA PPSSEPKSAP PSSEPLEKLA VIRRILPEIF AQRCGQRNSS FEAFAQRRTT YDYYNIRLNP REIIFRRLQE ESKVALALSS ANYFVLSILY
0601: RFFRQWSEVS LVRRNSRLTG NPSNEAQSSR SNRIEIPTLL DEPDREGSGG HLAAPEDPVD FLAQFDPLID LEDAYNTQPQ YTEAEVNARL LHEDHVEFDL
0701: VPVVSWNTEI TAKKTLSTTE SVAEVFALCG SGDRPLTCMI PGENERPWNP PRGYVCMYEA YFRQCHLWFP IPSLIISFLN RRHMAFSQLT PAAICNFVAA
0801: LTFGAEEGYL VNVRCFEEMT TLKAIRSPGY WVVNNRPKHN FLPGPKVSNF KNWEEYYFYV RVDLESYERP FSGRKRMWTE FPDRYRPSPD FPVEFEGVLE
0901: AIFRARRRTW KDVTRSRVNR IMGKVRKSFI SFAAGLLNMP PPPAPIEEER QPLDGEAAAS NPPVSAGPSG VDQVSHEMVN PESQDRMCLE GADVVPAQEI
1001: AECDRSQSVQ VVEPEVQNIT DDRSVVVYAA PPAGEEVNTG LTILDQDKDE TVAEPGISRR SREEKGKGGA NQSKKRSASE AGLDEAAAPK TFRLSRGETL
1101: NSDQFTFKYS GEKFLVRDQE AASHLWRNLM LPGTKDFPNP DDLVLKEGYQ KFARSSLETA ALANDLIATY DRKLKLKLAD REAFDNLKKC ADQAKAIYAK
1201: DMKEMASLRD AAEIHKAEMS SLNDEVKRLN SREADLQKEF SDLQVALVAV KEHGERECNR LRNDRAAKVA RTTKKAQARL DRVKAYLKEQ EDLVGPKVDA
1301: ENQARGAEEI VGILMQRGAK IAASELSGLK ELTKRATDEV NALNVIELGD DDLNMSPDQL GFSRQISQVA PVADQHGSNV DLLAEVIRRV SVEETNQTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)