AT4G32060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : calcium-binding EF hand family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); Has 1138 Blast hits to 1114 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 850; Fungi - 83; Plants - 103; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15501134..15503321 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55418.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 498 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPALSHYRSV SSLPSVDRSF LLIQRLRIHG SSSSFPESSP SASILSGADP LKCTVSGGSL AKWITGISAG SALGFLYWSS GSSDSISGLF GGSNLLSFAD 101: SSTPSVCGVK VGDLKPRSFI PKLSLPGYSS GFIFGDAYRR KIFFNYEKRL RLQSPPEKVF EYFASVRTDK GEILMKPADL MRAIVPVFPP SESHLVREGY 201: LTGERNPGEL RCSPSEFFML FDVDNDGLIS FKEYIFFVTL LSIPESSFAV AFKMFDTDNN GEIDKEEFKT VMSLMRSQHR QGVGHRDGLR TGLHMTGSVE 301: DGGLVEYFFG KDGSQKLKHD KFTKFMKDLT EEMLRLEFAH YDYKRRGSIS AKDFALSMVA AADASHLSKL LDRVESLSEH PHLRDMRISL KEFKQFDELR 401: SKLGPFSLAL FAYGKANGLL TMKDFKRAAS QVCGITLSDN VIEIAFHVFD SNQDGNLSVD EFLRVLHRRE RDVAQPIAKG LSRYFSDGWK GSKNCSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)