AT4G31900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chromatin remodeling factor, putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PICKLE RELATED 2 (PKR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 19383 Blast hits to 16625 proteins in 2121 species: Archae - 158; Bacteria - 5872; Metazoa - 3841; Fungi - 4162; Plants - 1629; Viruses - 186; Other Eukaryotes - 3535 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15431528..15438443 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139424.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1202 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MANLLQRLRR RTGPKPDYIE DKLDEYIREE QVEETGGSNQ DCPLGEIEKI LDREWRPTAS NNPNSSDNGT PTLVVVKQYL VKWKGLSYLH CSWVPEQEFE 0101: KAYKSHPHLK LKLRVTRFNA AMDVFIAENG AHEFIAIRPE WKTVDRIIAC REGDDGEEYL VKYKELSYRN SYWESESDIS DFQNEIQRFK DINSSSRRDK 0201: YVENERNREE FKQFDLTPEF LTGTLHTYQL EGLNFLRYSW SKKTNVILAD EMGLGKTIQS IAFLASLFEE NLSPHLVVAP LSTIRNWERE FATWAPHMNV 0301: VMYTGDSEAR DVIWEHEFYF SEGRKSKFDV LLTTYEMVHP GISVLSPIKW TCMIIDEGHR LKNQKSKLYS SLSQFTSKHI VLLTGTPLQN NLNELFALMH 0401: FLDADKFGSL EKFQDINKEE QISRLHQMLA PHLLRRLKKD VLKDKVPPKK ELILRVDMSS QQKEVYKAVI TNNYQVLTKK RDAKISNVLM KLRQVCSHPY 0501: LLPDFEPRFE DANEAFTKLL EASGKLQLLD KMMVKLKEQG HRVLIYTQFQ HTLYLLEDYF TFKNWNYERI DGKISGPERQ VRIDRFNAEN SNRFCFLLST 0601: RAGGIGINLA TADTVIIYDS DWNPHADLQA MARVHRLGQT NKVMIYRLIH KGTVEERMME ITKNKMLLEH LVVGKQHLCQ DELDDIIKYG SKELFSEEND 0701: EAGRSGKIHY DDAAIEQLLD RNHVDAVEVS LDDEEETDFL KNFKVASFEY VDDENEAAAL EEAQAIENNS SVRNADRTSH WKDLLKDKYE VQQAEELSAL 0801: GKRKRNGKQV MYAEDDLDGL EEISDEEDEY CLDDLKVTSD EEEEADEPEA ARQRKPRTVT RPYRKRARDN SEEIPLMEGE GRYLMVLGFN ETERDIFLRT 0901: FKRYGAGNFD WKEFVNPLYM KTYDEINKYG ILFLKHIAEN PTDNSTNFKV ITAMVYADGV PKEGISSDEL LVSMTFMMLV KEKCQFLDNH PTAPVFSNYV 1001: ISKYNLRNGA FSKEEHDRIL IPAVSKHGYG RWVAIVEDEE IGFQEVACKD LNIPFPPDTK SARKRICDHV GKRVKKMEDA IKYEYAEKIL AEQAKAETKG 1101: TSFVDAEKEM LKNDPITSKK NSATAVDNKQ GRVEMAQSYD QSVNEKSGES FQTYLDIQPL NRMPRESFKP LEPINEEIST RLSVGTDHDV EMDAADNIIV 1201: LD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)