suba logo
AT4G31890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G25130.1); Has 1876 Blast hits to 1673 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 369; Fungi - 233; Plants - 1143; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITMKeggNOG:ENOG4111IDDEMBL:AK228494EMBL:AL049607
EMBL:AL161579EMBL:BT033029EMBL:CP002687EnsemblPlants:AT4G31890
EnsemblPlants:AT4G31890.1EnsemblPlants:AT4G31890.2entrez:829319Gene3D:1.25.10.10
GeneID:829319Gramene:AT4G31890.1Gramene:AT4G31890.2hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF59HOGENOM:HOG000243144InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT4G31890ncoils:CoilOMA:TEQARHD
PhylomeDB:Q9SZ56PIR:T06311Proteomes:UP000006548RefSeq:NP_001190883.1
RefSeq:NP_194917.1SMART:SM00185SMR:Q9SZ56SUPFAM:SSF48371
TAIR:AT4G31890UniGene:At.44088UniProt:Q9SZ56
Coordinates (TAIR10) chr4:-:15427290..15429049
Molecular Weight (calculated) 56232.30 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.13
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKCHRNNIG SLILDRAPST SSSSTSGYHF RLWSTFSRST FRRKIVDAVS CGGSSRYRHE LREEDDEGSY VTVTAKSTVA SSKDAKANTI GAALNGVAFE
101: ETSKKSEKLC DLLNLAEVEA DVETMKKEEA LEVLKRVVRE LQSAAAARED NDDGGDCRKK ITAASEVRLL AKEDSEARVT LAMLGAIPPL VSMIDDSRIV
201: DAQIASLYAL LNLGIGNDAN KAAIVKAGAV HKMLKLIESP NTPDQEIAEA VVANFLGLSA LDSNKPIIGS SGAIIFLVKT LQNLDETSSS QAREDALRAL
301: YNLSIYQPNV SFILETDLIT YLLNTLGDME VSERILAILS NLVAVPEGRK AIGLVCDAFP VLVDVLNWTD SPGCQEKATY ILMLMAHKGY GDRQVMIEAG
401: IESALLELTL LGSALAQKRA SRILECLRVD KGKQVLDSTG SCGALSAPIY GTRDNGLDHE ENDLMMSEER KAVKQLVQQS LQSNMKRIVK RANLPQDFVP
501: SEHFKSLSLS STSKSLPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)