AT4G31740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.588 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sec1/munc18-like (SM) proteins superfamily | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sec1/munc18-like (SM) proteins superfamily; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT2G17980.1); Has 391 Blast hits to 391 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 139; Plants - 66; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15363778..15364349 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 18626.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.12 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 171 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKLRFAIMY LLSLETINQS EVEAVEAALP SADSASRSNI VDWAEKLYGQ SISAVTPGVK NLLSSDQQLP VARTVEALTD GKPNPETDSY LILDARASKS 101: GSIDNSYVKG PFEEAIVFMI GGGNYIEYSS LQELSQRQEM VNNIIYGATE ILTGTELVEQ LGELGQKMGL R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)